Hb_007672_050

Information

Type transcription factor
Description TF Family: G2-like
Location Contig7672: 84222-86470
Sequence    

Annotation

kegg
ID rcu:RCOM_0602150
description DNA binding protein, putative
nr
ID XP_002522328.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9ZWJ9
description Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1
trembl
ID B9S8K9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0602150 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57452: 84341-85675 , PASA_asmbl_57453: 85685-85875 , PASA_asmbl_57454: 85970-86339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007672_050 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_002496_050 0.089540048 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
3 Hb_164926_030 0.0956273338 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
4 Hb_001277_330 0.1010217938 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
5 Hb_002686_290 0.1023809217 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
6 Hb_003376_040 0.1032144217 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
7 Hb_001828_140 0.1038833159 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
8 Hb_000236_070 0.1040233485 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011316_040 0.1064672711 - - peptidase, putative [Ricinus communis]
10 Hb_000754_040 0.1090450242 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
11 Hb_007508_070 0.1100756985 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
12 Hb_000505_010 0.1121994468 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
13 Hb_000614_230 0.1130026423 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
14 Hb_000630_070 0.1133330465 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
15 Hb_006915_050 0.113533976 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
16 Hb_000648_110 0.11362424 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
17 Hb_002518_140 0.1151959828 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
18 Hb_000567_260 0.1170354647 - - BnaA09g41440D [Brassica napus]
19 Hb_015198_020 0.1203041392 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000030_010 0.1213814553 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]

Gene co-expression network

sample Hb_007672_050 Hb_007672_050 Hb_002496_050 Hb_002496_050 Hb_007672_050--Hb_002496_050 Hb_164926_030 Hb_164926_030 Hb_007672_050--Hb_164926_030 Hb_001277_330 Hb_001277_330 Hb_007672_050--Hb_001277_330 Hb_002686_290 Hb_002686_290 Hb_007672_050--Hb_002686_290 Hb_003376_040 Hb_003376_040 Hb_007672_050--Hb_003376_040 Hb_001828_140 Hb_001828_140 Hb_007672_050--Hb_001828_140 Hb_006915_050 Hb_006915_050 Hb_002496_050--Hb_006915_050 Hb_000236_070 Hb_000236_070 Hb_002496_050--Hb_000236_070 Hb_002253_070 Hb_002253_070 Hb_002496_050--Hb_002253_070 Hb_001017_040 Hb_001017_040 Hb_002496_050--Hb_001017_040 Hb_002496_050--Hb_164926_030 Hb_000111_360 Hb_000111_360 Hb_164926_030--Hb_000111_360 Hb_164926_030--Hb_006915_050 Hb_000754_040 Hb_000754_040 Hb_164926_030--Hb_000754_040 Hb_000630_070 Hb_000630_070 Hb_164926_030--Hb_000630_070 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_001277_330--Hb_000754_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_000179_210 Hb_000179_210 Hb_002686_290--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_002686_290--Hb_000614_230 Hb_171900_080 Hb_171900_080 Hb_002686_290--Hb_171900_080 Hb_006816_140 Hb_006816_140 Hb_002686_290--Hb_006816_140 Hb_003266_130 Hb_003266_130 Hb_002686_290--Hb_003266_130 Hb_001085_170 Hb_001085_170 Hb_002686_290--Hb_001085_170 Hb_003929_160 Hb_003929_160 Hb_003376_040--Hb_003929_160 Hb_007380_070 Hb_007380_070 Hb_003376_040--Hb_007380_070 Hb_007908_020 Hb_007908_020 Hb_003376_040--Hb_007908_020 Hb_001862_190 Hb_001862_190 Hb_003376_040--Hb_001862_190 Hb_001396_180 Hb_001396_180 Hb_003376_040--Hb_001396_180 Hb_000096_090 Hb_000096_090 Hb_003376_040--Hb_000096_090 Hb_001828_140--Hb_171900_080 Hb_001959_080 Hb_001959_080 Hb_001828_140--Hb_001959_080 Hb_001828_140--Hb_003376_040 Hb_007547_010 Hb_007547_010 Hb_001828_140--Hb_007547_010 Hb_003609_040 Hb_003609_040 Hb_001828_140--Hb_003609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.8696 12.383 7.65078 8.51897 34.757 27.9519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.2816 27.9115 44.9473 6.22182 21.9259

CAGE analysis