Hb_007672_060

Information

Type transcription factor
Description TF Family: SWI/SNF-BAF60b
Location Contig7672: 94225-100061
Sequence    

Annotation

kegg
ID rcu:RCOM_0602170
description Upstream activation factor subunit UAF30, putative
nr
ID XP_002522329.1
description Upstream activation factor subunit UAF30, putative [Ricinus communis]
swissprot
ID O74503
description Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
trembl
ID B9S8L0
description Upstream activation factor subunit UAF30, putative OS=Ricinus communis GN=RCOM_0602170 PE=4 SV=1
Gene Ontology
ID GO:0003677
description upstream activation factor subunit spp27-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57455: 94275-95604 , PASA_asmbl_57456: 95460-95561 , PASA_asmbl_57459: 98171-99186 , PASA_asmbl_57460: 97624-99196
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007672_060 0.0 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
2 Hb_002947_030 0.0611619535 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
3 Hb_000054_090 0.0651126084 - - zinc finger protein, putative [Ricinus communis]
4 Hb_001579_270 0.0680449412 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
5 Hb_000599_300 0.0687859647 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
6 Hb_033594_120 0.0753459729 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
7 Hb_003428_030 0.0777141165 - - tRNA, putative [Ricinus communis]
8 Hb_002739_050 0.0782707861 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
9 Hb_000181_130 0.0787074072 - - ATP binding protein, putative [Ricinus communis]
10 Hb_007416_340 0.0815642188 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000960_060 0.0838611471 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
12 Hb_005504_060 0.0854884145 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
13 Hb_000526_050 0.0861315407 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
14 Hb_008406_190 0.0867587227 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
15 Hb_000120_790 0.0872906301 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
16 Hb_001252_130 0.0885282256 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
17 Hb_005731_050 0.0891159373 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
18 Hb_002374_370 0.0894425479 - - protein with unknown function [Ricinus communis]
19 Hb_008748_040 0.0900979357 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
20 Hb_000093_160 0.0910561318 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007672_060 Hb_007672_060 Hb_002947_030 Hb_002947_030 Hb_007672_060--Hb_002947_030 Hb_000054_090 Hb_000054_090 Hb_007672_060--Hb_000054_090 Hb_001579_270 Hb_001579_270 Hb_007672_060--Hb_001579_270 Hb_000599_300 Hb_000599_300 Hb_007672_060--Hb_000599_300 Hb_033594_120 Hb_033594_120 Hb_007672_060--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_007672_060--Hb_003428_030 Hb_033642_030 Hb_033642_030 Hb_002947_030--Hb_033642_030 Hb_007919_100 Hb_007919_100 Hb_002947_030--Hb_007919_100 Hb_019280_030 Hb_019280_030 Hb_002947_030--Hb_019280_030 Hb_007943_110 Hb_007943_110 Hb_002947_030--Hb_007943_110 Hb_007657_010 Hb_007657_010 Hb_002947_030--Hb_007657_010 Hb_001252_130 Hb_001252_130 Hb_000054_090--Hb_001252_130 Hb_007017_030 Hb_007017_030 Hb_000054_090--Hb_007017_030 Hb_000081_160 Hb_000081_160 Hb_000054_090--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_000054_090--Hb_001971_010 Hb_000173_290 Hb_000173_290 Hb_000054_090--Hb_000173_290 Hb_001579_270--Hb_000599_300 Hb_001579_270--Hb_000054_090 Hb_054865_120 Hb_054865_120 Hb_001579_270--Hb_054865_120 Hb_001579_270--Hb_033594_120 Hb_003633_030 Hb_003633_030 Hb_001579_270--Hb_003633_030 Hb_002893_080 Hb_002893_080 Hb_000599_300--Hb_002893_080 Hb_000599_300--Hb_003633_030 Hb_002473_130 Hb_002473_130 Hb_000599_300--Hb_002473_130 Hb_000599_300--Hb_000054_090 Hb_033594_120--Hb_003633_030 Hb_033594_120--Hb_001252_130 Hb_000421_220 Hb_000421_220 Hb_033594_120--Hb_000421_220 Hb_033594_120--Hb_000054_090 Hb_000960_060 Hb_000960_060 Hb_033594_120--Hb_000960_060 Hb_033594_120--Hb_002473_130 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49405 1.78411 1.82157 2.97433 3.32962 3.75052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72573 3.50123 1.96607 1.92666 2.8101

CAGE analysis