Hb_007676_100

Information

Type -
Description -
Location Contig7676: 159421-169859
Sequence    

Annotation

kegg
ID rcu:RCOM_0147060
description hypothetical protein
nr
ID XP_012088178.1
description PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JJW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26708 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57475: 159380-169894
cDNA
(Sanger)
(ID:Location)		 008_A16.ab1: 167079-169894 , 021_L14.ab1: 166961-169894

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007676_100 0.0 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
2 Hb_004659_080 0.0523489069 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
3 Hb_000959_040 0.0590230754 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
4 Hb_006252_020 0.0593649131 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
5 Hb_000331_330 0.0609547277 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
6 Hb_002188_110 0.06610184 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_004128_050 0.0721567554 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
8 Hb_183963_030 0.0726974719 - - DNA binding protein, putative [Ricinus communis]
9 Hb_157966_010 0.0727951862 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
10 Hb_000046_010 0.0754532329 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
11 Hb_000441_070 0.0761423127 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
12 Hb_002615_090 0.0777387125 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
13 Hb_008112_030 0.0782989549 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002890_090 0.0791454432 - - Auxin response factor 1 [Glycine soja]
15 Hb_001059_100 0.0803974883 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
16 Hb_000622_250 0.0804787413 - - atpob1, putative [Ricinus communis]
17 Hb_001902_060 0.0813208058 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
18 Hb_000025_360 0.0830545099 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
19 Hb_003044_020 0.0836680025 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
20 Hb_000236_220 0.0836689964 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]

Gene co-expression network

sample Hb_007676_100 Hb_007676_100 Hb_004659_080 Hb_004659_080 Hb_007676_100--Hb_004659_080 Hb_000959_040 Hb_000959_040 Hb_007676_100--Hb_000959_040 Hb_006252_020 Hb_006252_020 Hb_007676_100--Hb_006252_020 Hb_000331_330 Hb_000331_330 Hb_007676_100--Hb_000331_330 Hb_002188_110 Hb_002188_110 Hb_007676_100--Hb_002188_110 Hb_004128_050 Hb_004128_050 Hb_007676_100--Hb_004128_050 Hb_004659_080--Hb_006252_020 Hb_157966_010 Hb_157966_010 Hb_004659_080--Hb_157966_010 Hb_000622_250 Hb_000622_250 Hb_004659_080--Hb_000622_250 Hb_001221_160 Hb_001221_160 Hb_004659_080--Hb_001221_160 Hb_002392_030 Hb_002392_030 Hb_004659_080--Hb_002392_030 Hb_000959_040--Hb_002188_110 Hb_004718_010 Hb_004718_010 Hb_000959_040--Hb_004718_010 Hb_183963_030 Hb_183963_030 Hb_000959_040--Hb_183963_030 Hb_010578_060 Hb_010578_060 Hb_000959_040--Hb_010578_060 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_002174_020 Hb_002174_020 Hb_006252_020--Hb_002174_020 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_001243_060 Hb_001243_060 Hb_000331_330--Hb_001243_060 Hb_000116_060 Hb_000116_060 Hb_000331_330--Hb_000116_060 Hb_000331_330--Hb_004128_050 Hb_005489_080 Hb_005489_080 Hb_000331_330--Hb_005489_080 Hb_002615_090 Hb_002615_090 Hb_000331_330--Hb_002615_090 Hb_002188_110--Hb_183963_030 Hb_000025_360 Hb_000025_360 Hb_002188_110--Hb_000025_360 Hb_000441_070 Hb_000441_070 Hb_002188_110--Hb_000441_070 Hb_001247_070 Hb_001247_070 Hb_002188_110--Hb_001247_070 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3485 28.5424 8.53617 10.5986 26.7058 25.5115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.13653 10.0356 12.637 13.1191 9.02071

CAGE analysis