Hb_007677_010

Information

Type -
Description -
Location Contig7677: 24999-27121
Sequence    

Annotation

kegg
ID rcu:RCOM_1535280
description glycosyltransferase, putative
nr
ID XP_012080896.1
description PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S2Z4
description Glycosyltransferase, putative OS=Ricinus communis GN=RCOM_1535280 PE=4 SV=1
Gene Ontology
ID GO:0016757
description protein o-linked-mannose beta- -n-acetylglucosaminyltransferase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007677_010 0.0 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
2 Hb_001956_170 0.0143311813 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
3 Hb_000637_090 0.0180815986 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
4 Hb_009470_010 0.0604555391 - - -
5 Hb_003925_010 0.060678935 - - Polygalacturonase precursor, putative [Ricinus communis]
6 Hb_009896_010 0.0641227503 - - ABC transporter G family member 15 [Morus notabilis]
7 Hb_002186_190 0.073249317 - - -
8 Hb_000485_050 0.0799441163 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
9 Hb_000429_070 0.0839642468 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
10 Hb_027472_250 0.0886642726 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
11 Hb_103942_010 0.0897412344 - - rab5A-like protein [Trichinella spiralis]
12 Hb_008493_020 0.0941093505 - - linamarase [Manihot esculenta]
13 Hb_053058_010 0.0948210764 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004162_150 0.0953135124 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
15 Hb_001401_130 0.0995217219 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
16 Hb_009620_080 0.099851613 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
17 Hb_001386_070 0.1051991275 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
18 Hb_001634_070 0.1087531984 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000028_090 0.1105502077 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
20 Hb_001597_040 0.1118219006 - - -

Gene co-expression network

sample Hb_007677_010 Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_007677_010--Hb_001956_170 Hb_000637_090 Hb_000637_090 Hb_007677_010--Hb_000637_090 Hb_009470_010 Hb_009470_010 Hb_007677_010--Hb_009470_010 Hb_003925_010 Hb_003925_010 Hb_007677_010--Hb_003925_010 Hb_009896_010 Hb_009896_010 Hb_007677_010--Hb_009896_010 Hb_002186_190 Hb_002186_190 Hb_007677_010--Hb_002186_190 Hb_001956_170--Hb_000637_090 Hb_001956_170--Hb_009896_010 Hb_001956_170--Hb_009470_010 Hb_001956_170--Hb_003925_010 Hb_001956_170--Hb_002186_190 Hb_000637_090--Hb_009896_010 Hb_000637_090--Hb_003925_010 Hb_000637_090--Hb_009470_010 Hb_000637_090--Hb_002186_190 Hb_009470_010--Hb_002186_190 Hb_009470_010--Hb_009896_010 Hb_009470_010--Hb_003925_010 Hb_000485_050 Hb_000485_050 Hb_003925_010--Hb_000485_050 Hb_027472_250 Hb_027472_250 Hb_003925_010--Hb_027472_250 Hb_004162_150 Hb_004162_150 Hb_003925_010--Hb_004162_150 Hb_000429_070 Hb_000429_070 Hb_003925_010--Hb_000429_070 Hb_008493_020 Hb_008493_020 Hb_009896_010--Hb_008493_020 Hb_053058_010 Hb_053058_010 Hb_009896_010--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_009896_010--Hb_001634_070 Hb_002186_190--Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_002186_190--Hb_001401_130 Hb_000012_340 Hb_000012_340 Hb_002186_190--Hb_000012_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0109597 2.6212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.110125

CAGE analysis