Hb_007680_010

Information

Type -
Description -
Location Contig7680: 24770-26757
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDP36324.1
description hypothetical protein JCGZ_09539 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09539 PE=4 SV=1
Gene Ontology
ID GO:0005739
description transcription termination factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57540: 26376-26596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007680_010 0.0 - - hypothetical protein JCGZ_09539 [Jatropha curcas]
2 Hb_000946_140 0.1928950557 - - -
3 Hb_000363_160 0.2007713935 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
4 Hb_007963_040 0.2025178318 - - dopamine beta-monooxygenase, putative [Ricinus communis]
5 Hb_001897_040 0.2119063248 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
6 Hb_000365_020 0.2129202497 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
7 Hb_002903_090 0.2171484133 - - sugar transporter, putative [Ricinus communis]
8 Hb_000359_010 0.2176832932 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
9 Hb_000300_290 0.218213027 - - PREDICTED: uncharacterized protein LOC105632583 [Jatropha curcas]
10 Hb_003943_040 0.2202615892 - - DNA binding protein, putative [Ricinus communis]
11 Hb_003470_090 0.2218371762 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
12 Hb_001439_200 0.2220519602 - - Transmembrane protein Tmp21 precursor, putative [Ricinus communis]
13 Hb_000032_070 0.2226518122 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
14 Hb_004046_020 0.2244511527 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
15 Hb_000922_390 0.2257494156 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
16 Hb_000483_220 0.2257782238 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
17 Hb_002842_020 0.2268238447 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
18 Hb_000085_400 0.2283297493 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
19 Hb_004204_140 0.2284851953 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
20 Hb_001344_010 0.2288236238 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]

Gene co-expression network

sample Hb_007680_010 Hb_007680_010 Hb_000946_140 Hb_000946_140 Hb_007680_010--Hb_000946_140 Hb_000363_160 Hb_000363_160 Hb_007680_010--Hb_000363_160 Hb_007963_040 Hb_007963_040 Hb_007680_010--Hb_007963_040 Hb_001897_040 Hb_001897_040 Hb_007680_010--Hb_001897_040 Hb_000365_020 Hb_000365_020 Hb_007680_010--Hb_000365_020 Hb_002903_090 Hb_002903_090 Hb_007680_010--Hb_002903_090 Hb_004056_030 Hb_004056_030 Hb_000946_140--Hb_004056_030 Hb_001160_130 Hb_001160_130 Hb_000946_140--Hb_001160_130 Hb_000260_570 Hb_000260_570 Hb_000946_140--Hb_000260_570 Hb_001617_020 Hb_001617_020 Hb_000946_140--Hb_001617_020 Hb_000997_360 Hb_000997_360 Hb_000946_140--Hb_000997_360 Hb_003943_040 Hb_003943_040 Hb_000363_160--Hb_003943_040 Hb_000359_010 Hb_000359_010 Hb_000363_160--Hb_000359_010 Hb_005625_020 Hb_005625_020 Hb_000363_160--Hb_005625_020 Hb_002687_110 Hb_002687_110 Hb_000363_160--Hb_002687_110 Hb_000029_020 Hb_000029_020 Hb_000363_160--Hb_000029_020 Hb_000898_050 Hb_000898_050 Hb_000363_160--Hb_000898_050 Hb_000479_200 Hb_000479_200 Hb_007963_040--Hb_000479_200 Hb_017110_010 Hb_017110_010 Hb_007963_040--Hb_017110_010 Hb_007963_040--Hb_000363_160 Hb_000281_110 Hb_000281_110 Hb_007963_040--Hb_000281_110 Hb_003032_010 Hb_003032_010 Hb_007963_040--Hb_003032_010 Hb_032215_050 Hb_032215_050 Hb_007963_040--Hb_032215_050 Hb_004126_070 Hb_004126_070 Hb_001897_040--Hb_004126_070 Hb_001811_030 Hb_001811_030 Hb_001897_040--Hb_001811_030 Hb_000922_390 Hb_000922_390 Hb_001897_040--Hb_000922_390 Hb_001014_040 Hb_001014_040 Hb_001897_040--Hb_001014_040 Hb_003470_090 Hb_003470_090 Hb_001897_040--Hb_003470_090 Hb_000291_080 Hb_000291_080 Hb_001897_040--Hb_000291_080 Hb_000898_040 Hb_000898_040 Hb_000365_020--Hb_000898_040 Hb_004046_020 Hb_004046_020 Hb_000365_020--Hb_004046_020 Hb_002217_300 Hb_002217_300 Hb_000365_020--Hb_002217_300 Hb_001344_010 Hb_001344_010 Hb_000365_020--Hb_001344_010 Hb_000169_090 Hb_000169_090 Hb_000365_020--Hb_000169_090 Hb_005548_010 Hb_005548_010 Hb_000365_020--Hb_005548_010 Hb_002903_090--Hb_032215_050 Hb_000446_090 Hb_000446_090 Hb_002903_090--Hb_000446_090 Hb_000080_190 Hb_000080_190 Hb_002903_090--Hb_000080_190 Hb_002903_090--Hb_003943_040 Hb_002903_090--Hb_005625_020 Hb_002903_090--Hb_004046_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17559 0 0 2.32585 1.63817 1.18932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64525 0.868246 3.41165 1.42255 1.22264

CAGE analysis