Hb_007680_020

Information

Type transcription factor
Description TF Family: mTERF
Location Contig7680: 26886-27571
Sequence    

Annotation

kegg
ID rcu:RCOM_0169990
description hypothetical protein
nr
ID XP_002532942.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3X3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0169990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007680_020 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_006615_100 0.1103244313 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
3 Hb_005122_060 0.1363983386 - - unnamed protein product [Vitis vinifera]
4 Hb_001195_150 0.1479218845 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
5 Hb_000307_250 0.1483823723 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
6 Hb_007257_050 0.1485815585 - - protein with unknown function [Ricinus communis]
7 Hb_000281_010 0.1493546876 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
8 Hb_010128_070 0.1504523491 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_007348_030 0.1506016521 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
10 Hb_006501_020 0.1515693739 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
11 Hb_002849_080 0.1538380569 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
12 Hb_000270_560 0.1554152743 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
13 Hb_002349_050 0.1565800641 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
14 Hb_006588_050 0.1575848254 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
15 Hb_002804_050 0.1586717551 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
16 Hb_012395_160 0.1594454687 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
17 Hb_010584_010 0.1595725298 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
18 Hb_005399_020 0.1600360615 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
19 Hb_000116_280 0.1603261751 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
20 Hb_003106_150 0.1615275117 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]

Gene co-expression network

sample Hb_007680_020 Hb_007680_020 Hb_006615_100 Hb_006615_100 Hb_007680_020--Hb_006615_100 Hb_005122_060 Hb_005122_060 Hb_007680_020--Hb_005122_060 Hb_001195_150 Hb_001195_150 Hb_007680_020--Hb_001195_150 Hb_000307_250 Hb_000307_250 Hb_007680_020--Hb_000307_250 Hb_007257_050 Hb_007257_050 Hb_007680_020--Hb_007257_050 Hb_000281_010 Hb_000281_010 Hb_007680_020--Hb_000281_010 Hb_010128_070 Hb_010128_070 Hb_006615_100--Hb_010128_070 Hb_006615_100--Hb_000281_010 Hb_006615_100--Hb_001195_150 Hb_000997_410 Hb_000997_410 Hb_006615_100--Hb_000997_410 Hb_002804_050 Hb_002804_050 Hb_006615_100--Hb_002804_050 Hb_006816_410 Hb_006816_410 Hb_005122_060--Hb_006816_410 Hb_006588_050 Hb_006588_050 Hb_005122_060--Hb_006588_050 Hb_002105_080 Hb_002105_080 Hb_005122_060--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_005122_060--Hb_006816_300 Hb_000375_370 Hb_000375_370 Hb_005122_060--Hb_000375_370 Hb_015763_020 Hb_015763_020 Hb_005122_060--Hb_015763_020 Hb_128376_010 Hb_128376_010 Hb_001195_150--Hb_128376_010 Hb_000116_460 Hb_000116_460 Hb_001195_150--Hb_000116_460 Hb_008246_030 Hb_008246_030 Hb_001195_150--Hb_008246_030 Hb_001195_150--Hb_000281_010 Hb_007348_030 Hb_007348_030 Hb_000307_250--Hb_007348_030 Hb_001158_180 Hb_001158_180 Hb_000307_250--Hb_001158_180 Hb_000441_160 Hb_000441_160 Hb_000307_250--Hb_000441_160 Hb_000244_240 Hb_000244_240 Hb_000307_250--Hb_000244_240 Hb_002986_050 Hb_002986_050 Hb_000307_250--Hb_002986_050 Hb_031089_030 Hb_031089_030 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_009028_030 Hb_009028_030 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_003157_010 Hb_003157_010 Hb_007257_050--Hb_003157_010 Hb_000281_010--Hb_000116_460 Hb_000281_010--Hb_010128_070 Hb_000685_080 Hb_000685_080 Hb_000281_010--Hb_000685_080 Hb_001946_240 Hb_001946_240 Hb_000281_010--Hb_001946_240 Hb_009646_050 Hb_009646_050 Hb_000281_010--Hb_009646_050 Hb_003106_150 Hb_003106_150 Hb_000281_010--Hb_003106_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0279 9.67045 1.49299 2.28959 6.72863 11.89
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.948406 1.15217 2.76662 1.60271 1.73246

CAGE analysis