Hb_007694_050

Information

Type -
Description -
Location Contig7694: 68196-68806
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023969mg
description hypothetical protein
nr
ID KJB13963.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID K3ZNG2
description Uncharacterized protein OS=Setaria italica GN=Si028139m.g PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc cchc-type-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57549: 68026-68337 , PASA_asmbl_57550: 68838-69125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007694_050 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_002196_020 0.1118358413 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_001437_180 0.1173412847 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
4 Hb_000318_510 0.1200540654 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
5 Hb_004225_020 0.1238255154 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000270_760 0.1258930439 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
7 Hb_002636_050 0.1276942323 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
8 Hb_067345_010 0.1290619896 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_008085_010 0.1317013601 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
10 Hb_006921_030 0.1346562684 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
11 Hb_000227_240 0.1350747366 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
12 Hb_000209_020 0.1376816213 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
13 Hb_002493_100 0.13982392 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
14 Hb_001700_040 0.1406679244 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
15 Hb_000915_050 0.1420100986 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022400_010 0.1434703616 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
17 Hb_001943_010 0.1438869436 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
18 Hb_000331_210 0.1448092995 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
19 Hb_000703_220 0.1453782015 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
20 Hb_005324_010 0.1455097522 - - Chaperone protein dnaJ, putative [Ricinus communis]

Gene co-expression network

sample Hb_007694_050 Hb_007694_050 Hb_002196_020 Hb_002196_020 Hb_007694_050--Hb_002196_020 Hb_001437_180 Hb_001437_180 Hb_007694_050--Hb_001437_180 Hb_000318_510 Hb_000318_510 Hb_007694_050--Hb_000318_510 Hb_004225_020 Hb_004225_020 Hb_007694_050--Hb_004225_020 Hb_000270_760 Hb_000270_760 Hb_007694_050--Hb_000270_760 Hb_002636_050 Hb_002636_050 Hb_007694_050--Hb_002636_050 Hb_002196_020--Hb_000318_510 Hb_000321_070 Hb_000321_070 Hb_002196_020--Hb_000321_070 Hb_000160_040 Hb_000160_040 Hb_002196_020--Hb_000160_040 Hb_067345_010 Hb_067345_010 Hb_002196_020--Hb_067345_010 Hb_006332_010 Hb_006332_010 Hb_002196_020--Hb_006332_010 Hb_000915_050 Hb_000915_050 Hb_002196_020--Hb_000915_050 Hb_001437_180--Hb_002636_050 Hb_004734_060 Hb_004734_060 Hb_001437_180--Hb_004734_060 Hb_001771_130 Hb_001771_130 Hb_001437_180--Hb_001771_130 Hb_008085_010 Hb_008085_010 Hb_001437_180--Hb_008085_010 Hb_000386_030 Hb_000386_030 Hb_001437_180--Hb_000386_030 Hb_004602_040 Hb_004602_040 Hb_001437_180--Hb_004602_040 Hb_000283_070 Hb_000283_070 Hb_000318_510--Hb_000283_070 Hb_001700_040 Hb_001700_040 Hb_000318_510--Hb_001700_040 Hb_001143_160 Hb_001143_160 Hb_000318_510--Hb_001143_160 Hb_007163_090 Hb_007163_090 Hb_000318_510--Hb_007163_090 Hb_000347_180 Hb_000347_180 Hb_000318_510--Hb_000347_180 Hb_004545_140 Hb_004545_140 Hb_000318_510--Hb_004545_140 Hb_001001_060 Hb_001001_060 Hb_004225_020--Hb_001001_060 Hb_004225_020--Hb_000915_050 Hb_002131_020 Hb_002131_020 Hb_004225_020--Hb_002131_020 Hb_004204_020 Hb_004204_020 Hb_004225_020--Hb_004204_020 Hb_001663_030 Hb_001663_030 Hb_004225_020--Hb_001663_030 Hb_001516_100 Hb_001516_100 Hb_004225_020--Hb_001516_100 Hb_000327_340 Hb_000327_340 Hb_000270_760--Hb_000327_340 Hb_000270_760--Hb_000318_510 Hb_000270_760--Hb_001700_040 Hb_000244_220 Hb_000244_220 Hb_000270_760--Hb_000244_220 Hb_000856_310 Hb_000856_310 Hb_000270_760--Hb_000856_310 Hb_003531_060 Hb_003531_060 Hb_000270_760--Hb_003531_060 Hb_004452_010 Hb_004452_010 Hb_002636_050--Hb_004452_010 Hb_008500_010 Hb_008500_010 Hb_002636_050--Hb_008500_010 Hb_002636_050--Hb_001700_040 Hb_009486_200 Hb_009486_200 Hb_002636_050--Hb_009486_200 Hb_001584_150 Hb_001584_150 Hb_002636_050--Hb_001584_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.929414 0.482548 0.0758707 0.395085 0.386294 1.06394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.346757 0.363293 0.783022 0.824246 0.173073

CAGE analysis