Hb_007694_060

Information

Type -
Description -
Location Contig7694: 69301-72637
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11170g
description POPTRDRAFT_737939; ribosomal protein L35
nr
ID XP_012071572.1
description PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
swissprot
ID P23326
description 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1
trembl
ID A0A067KRB9
description 50S ribosomal protein L35 OS=Jatropha curcas GN=JCGZ_04079 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007694_060 0.0 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
2 Hb_004459_060 0.0883508443 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
3 Hb_000005_130 0.094392128 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
4 Hb_006620_070 0.0979449137 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
5 Hb_005488_160 0.1053195407 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
6 Hb_023732_050 0.1127565144 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_001405_090 0.1132540599 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
8 Hb_000442_070 0.1146148636 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
9 Hb_007426_170 0.1175139758 transcription factor TF Family: TCP -
10 Hb_005563_040 0.1175300201 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
11 Hb_000802_050 0.121560346 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
12 Hb_006829_080 0.1223007985 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
13 Hb_011114_020 0.1231540018 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
14 Hb_002411_100 0.1232489734 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
15 Hb_001300_130 0.1244040123 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
16 Hb_027298_020 0.1308892435 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
17 Hb_002232_380 0.1309495134 - - malate dehydrogenase, putative [Ricinus communis]
18 Hb_003948_020 0.1328152775 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
19 Hb_000146_030 0.1331217106 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
20 Hb_000977_270 0.1373642849 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007694_060 Hb_007694_060 Hb_004459_060 Hb_004459_060 Hb_007694_060--Hb_004459_060 Hb_000005_130 Hb_000005_130 Hb_007694_060--Hb_000005_130 Hb_006620_070 Hb_006620_070 Hb_007694_060--Hb_006620_070 Hb_005488_160 Hb_005488_160 Hb_007694_060--Hb_005488_160 Hb_023732_050 Hb_023732_050 Hb_007694_060--Hb_023732_050 Hb_001405_090 Hb_001405_090 Hb_007694_060--Hb_001405_090 Hb_004459_060--Hb_006620_070 Hb_000146_030 Hb_000146_030 Hb_004459_060--Hb_000146_030 Hb_002411_100 Hb_002411_100 Hb_004459_060--Hb_002411_100 Hb_012545_040 Hb_012545_040 Hb_004459_060--Hb_012545_040 Hb_004459_060--Hb_000005_130 Hb_006829_080 Hb_006829_080 Hb_000005_130--Hb_006829_080 Hb_007426_170 Hb_007426_170 Hb_000005_130--Hb_007426_170 Hb_000802_050 Hb_000802_050 Hb_000005_130--Hb_000802_050 Hb_000005_130--Hb_006620_070 Hb_001959_060 Hb_001959_060 Hb_000005_130--Hb_001959_060 Hb_006620_070--Hb_001405_090 Hb_006620_070--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_006620_070--Hb_000442_070 Hb_005563_040 Hb_005563_040 Hb_005488_160--Hb_005563_040 Hb_005488_160--Hb_002411_100 Hb_015175_040 Hb_015175_040 Hb_005488_160--Hb_015175_040 Hb_010557_010 Hb_010557_010 Hb_005488_160--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_005488_160--Hb_000703_070 Hb_011114_020 Hb_011114_020 Hb_023732_050--Hb_011114_020 Hb_023732_050--Hb_006620_070 Hb_023732_050--Hb_004459_060 Hb_003038_100 Hb_003038_100 Hb_023732_050--Hb_003038_100 Hb_023732_050--Hb_001405_090 Hb_001405_090--Hb_004459_060 Hb_001405_090--Hb_000442_070 Hb_001405_090--Hb_011114_020 Hb_000206_170 Hb_000206_170 Hb_001405_090--Hb_000206_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.19202 2.06383 39.2929 9.8623 3.56458 2.6089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65076 10.6613 5.08159 2.02664 52.6946

CAGE analysis