Hb_007709_020

Information

Type -
Description -
Location Contig7709: 16059-17082
Sequence    

Annotation

kegg
ID bvg:104892028
description uncharacterized LOC104892028
nr
ID XP_010926849.1
description PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID A5BJ98
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007709_020 0.0 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
2 Hb_028872_040 0.0405442496 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002142_010 0.0719434675 - - conserved hypothetical protein [Ricinus communis]
4 Hb_151694_010 0.0806980491 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
5 Hb_138667_010 0.0807617893 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
6 Hb_000280_120 0.1098495444 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
7 Hb_003938_100 0.1118949926 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000243_050 0.1162983439 - - ADP-ribosylation factor, putative [Ricinus communis]
9 Hb_038190_030 0.1216371876 - - -
10 Hb_002585_060 0.1458541989 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
11 Hb_003727_060 0.1616868563 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_005081_090 0.16713028 - - -
13 Hb_004021_120 0.1706228824 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
14 Hb_168909_010 0.1732877666 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
15 Hb_044313_010 0.1770173928 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011242_070 0.1805816861 - - beta-cyanoalanine synthase [Hevea brasiliensis]
17 Hb_004063_010 0.1818580912 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_006013_030 0.1854204041 - - -
19 Hb_001301_070 0.188204191 - - -
20 Hb_032299_070 0.1893368578 - - -

Gene co-expression network

sample Hb_007709_020 Hb_007709_020 Hb_028872_040 Hb_028872_040 Hb_007709_020--Hb_028872_040 Hb_002142_010 Hb_002142_010 Hb_007709_020--Hb_002142_010 Hb_151694_010 Hb_151694_010 Hb_007709_020--Hb_151694_010 Hb_138667_010 Hb_138667_010 Hb_007709_020--Hb_138667_010 Hb_000280_120 Hb_000280_120 Hb_007709_020--Hb_000280_120 Hb_003938_100 Hb_003938_100 Hb_007709_020--Hb_003938_100 Hb_028872_040--Hb_138667_010 Hb_028872_040--Hb_002142_010 Hb_028872_040--Hb_000280_120 Hb_000243_050 Hb_000243_050 Hb_028872_040--Hb_000243_050 Hb_028872_040--Hb_003938_100 Hb_002142_010--Hb_151694_010 Hb_044313_010 Hb_044313_010 Hb_002142_010--Hb_044313_010 Hb_002142_010--Hb_138667_010 Hb_002142_010--Hb_000280_120 Hb_151694_010--Hb_028872_040 Hb_151694_010--Hb_044313_010 Hb_151694_010--Hb_138667_010 Hb_004021_120 Hb_004021_120 Hb_151694_010--Hb_004021_120 Hb_138667_010--Hb_000280_120 Hb_138667_010--Hb_000243_050 Hb_138667_010--Hb_003938_100 Hb_168909_010 Hb_168909_010 Hb_138667_010--Hb_168909_010 Hb_000280_120--Hb_000243_050 Hb_000280_120--Hb_168909_010 Hb_000280_120--Hb_003938_100 Hb_006013_030 Hb_006013_030 Hb_000280_120--Hb_006013_030 Hb_003938_100--Hb_000243_050 Hb_038190_030 Hb_038190_030 Hb_003938_100--Hb_038190_030 Hb_001301_070 Hb_001301_070 Hb_003938_100--Hb_001301_070 Hb_002056_140 Hb_002056_140 Hb_003938_100--Hb_002056_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.133921 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0778406 0.0974162

CAGE analysis