Hb_007722_010

Information

Type -
Description -
Location Contig7722: 9742-12760
Sequence    

Annotation

kegg
ID tcc:TCM_016881
description Tetratricopeptide repeat-like superfamily protein
nr
ID XP_012081574.1
description PREDICTED: kinesin light chain [Jatropha curcas]
swissprot
ID Q7Z494
description Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1
trembl
ID A0A067LA63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09595 PE=4 SV=1
Gene Ontology
ID GO:0005886
description kinesin light chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57684: 9842-10976 , PASA_asmbl_57685: 11556-12532 , PASA_asmbl_57686: 12557-12697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007722_010 0.0 - - PREDICTED: kinesin light chain [Jatropha curcas]
2 Hb_000365_090 0.1774595231 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_004375_130 0.1825212835 - - kinesin heavy chain, putative [Ricinus communis]
4 Hb_000554_010 0.1852092817 - - transporter, putative [Ricinus communis]
5 Hb_004007_160 0.1928906639 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
6 Hb_182516_010 0.193687831 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
7 Hb_095595_010 0.2012617567 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
8 Hb_000025_090 0.2015359328 - - tubulin beta chain, putative [Ricinus communis]
9 Hb_000796_170 0.2031761687 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
10 Hb_005000_130 0.2051754687 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
11 Hb_011344_160 0.2055098293 - - PREDICTED: primary amine oxidase [Jatropha curcas]
12 Hb_004846_200 0.2056854741 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
13 Hb_000649_050 0.2094568836 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
14 Hb_000982_110 0.2095334534 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
15 Hb_005271_050 0.2123975631 - - Tubulin beta-8 chain -like protein [Gossypium arboreum]
16 Hb_000135_030 0.2128872863 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
17 Hb_002769_020 0.2143135821 - - DNA-damage-inducible protein f, putative [Ricinus communis]
18 Hb_000086_200 0.2172991602 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_002615_040 0.2184844026 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
20 Hb_005867_060 0.2202845016 - - PREDICTED: NADPH--cytochrome P450 reductase [Jatropha curcas]

Gene co-expression network

sample Hb_007722_010 Hb_007722_010 Hb_000365_090 Hb_000365_090 Hb_007722_010--Hb_000365_090 Hb_004375_130 Hb_004375_130 Hb_007722_010--Hb_004375_130 Hb_000554_010 Hb_000554_010 Hb_007722_010--Hb_000554_010 Hb_004007_160 Hb_004007_160 Hb_007722_010--Hb_004007_160 Hb_182516_010 Hb_182516_010 Hb_007722_010--Hb_182516_010 Hb_095595_010 Hb_095595_010 Hb_007722_010--Hb_095595_010 Hb_000365_090--Hb_182516_010 Hb_026447_030 Hb_026447_030 Hb_000365_090--Hb_026447_030 Hb_000365_090--Hb_004375_130 Hb_002027_220 Hb_002027_220 Hb_000365_090--Hb_002027_220 Hb_001268_210 Hb_001268_210 Hb_000365_090--Hb_001268_210 Hb_004375_130--Hb_000554_010 Hb_003376_050 Hb_003376_050 Hb_004375_130--Hb_003376_050 Hb_002769_020 Hb_002769_020 Hb_004375_130--Hb_002769_020 Hb_000096_080 Hb_000096_080 Hb_004375_130--Hb_000096_080 Hb_000392_370 Hb_000392_370 Hb_004375_130--Hb_000392_370 Hb_004705_040 Hb_004705_040 Hb_004375_130--Hb_004705_040 Hb_000554_010--Hb_004007_160 Hb_000554_010--Hb_004705_040 Hb_000281_110 Hb_000281_110 Hb_000554_010--Hb_000281_110 Hb_007479_050 Hb_007479_050 Hb_000554_010--Hb_007479_050 Hb_000649_050 Hb_000649_050 Hb_000554_010--Hb_000649_050 Hb_004007_160--Hb_004705_040 Hb_000956_130 Hb_000956_130 Hb_004007_160--Hb_000956_130 Hb_004007_160--Hb_000649_050 Hb_028358_010 Hb_028358_010 Hb_004007_160--Hb_028358_010 Hb_000299_040 Hb_000299_040 Hb_004007_160--Hb_000299_040 Hb_182516_010--Hb_004375_130 Hb_000137_070 Hb_000137_070 Hb_182516_010--Hb_000137_070 Hb_001141_410 Hb_001141_410 Hb_182516_010--Hb_001141_410 Hb_113739_010 Hb_113739_010 Hb_182516_010--Hb_113739_010 Hb_003929_110 Hb_003929_110 Hb_095595_010--Hb_003929_110 Hb_003058_040 Hb_003058_040 Hb_095595_010--Hb_003058_040 Hb_001500_050 Hb_001500_050 Hb_095595_010--Hb_001500_050 Hb_011344_160 Hb_011344_160 Hb_095595_010--Hb_011344_160 Hb_011316_090 Hb_011316_090 Hb_095595_010--Hb_011316_090 Hb_003794_010 Hb_003794_010 Hb_095595_010--Hb_003794_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5371 4.18789 3.10207 22.8993 14.1494 16.5768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6682 6.71762 7.87581 0.873596 24.6786

CAGE analysis