Hb_007735_060

Information

Type -
Description -
Location Contig7735: 18411-24860
Sequence    

Annotation

kegg
ID tcc:TCM_027289
description Inorganic H pyrophosphatase family protein isoform 1
nr
ID AAS66771.1
description PPase [Hevea brasiliensis]
swissprot
ID P21616
description Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=4
trembl
ID Q6R4U3
description PPase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005739
description pyrophosphate-energized vacuolar membrane proton pump-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57706: 18407-24646 , PASA_asmbl_57707: 19064-19486 , PASA_asmbl_57709: 22278-22466 , PASA_asmbl_57710: 19723-20073
cDNA
(Sanger)
(ID:Location)		 014_O09.ab1: 22219-24638 , 026_E16.ab1: 24417-24638 , 033_J05.ab1: 21927-24638 , 043_M18.ab1: 22046-24637

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007735_060 0.0 - - PPase [Hevea brasiliensis]
2 Hb_001801_020 0.1127872278 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
3 Hb_002817_060 0.1192702356 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
4 Hb_000367_020 0.1252042247 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
5 Hb_000484_010 0.1319937441 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
6 Hb_012053_090 0.132913212 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
7 Hb_002235_200 0.1333683921 - - pattern formation protein, putative [Ricinus communis]
8 Hb_034585_010 0.1336812745 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
9 Hb_015183_080 0.1338605883 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_001054_120 0.1345534942 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
11 Hb_005701_130 0.1350270539 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
12 Hb_000465_280 0.1356462861 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
13 Hb_002400_060 0.137343857 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
14 Hb_001377_100 0.1375460831 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
15 Hb_126976_010 0.1377345924 - - -
16 Hb_003607_070 0.1381074611 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
17 Hb_000059_230 0.1386711728 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
18 Hb_005563_060 0.1397290381 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
19 Hb_001393_010 0.1426101229 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
20 Hb_015292_060 0.1426727656 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]

Gene co-expression network

sample Hb_007735_060 Hb_007735_060 Hb_001801_020 Hb_001801_020 Hb_007735_060--Hb_001801_020 Hb_002817_060 Hb_002817_060 Hb_007735_060--Hb_002817_060 Hb_000367_020 Hb_000367_020 Hb_007735_060--Hb_000367_020 Hb_000484_010 Hb_000484_010 Hb_007735_060--Hb_000484_010 Hb_012053_090 Hb_012053_090 Hb_007735_060--Hb_012053_090 Hb_002235_200 Hb_002235_200 Hb_007735_060--Hb_002235_200 Hb_033642_060 Hb_033642_060 Hb_001801_020--Hb_033642_060 Hb_002400_060 Hb_002400_060 Hb_001801_020--Hb_002400_060 Hb_183086_030 Hb_183086_030 Hb_001801_020--Hb_183086_030 Hb_022250_010 Hb_022250_010 Hb_001801_020--Hb_022250_010 Hb_126976_010 Hb_126976_010 Hb_001801_020--Hb_126976_010 Hb_001801_020--Hb_002817_060 Hb_000347_300 Hb_000347_300 Hb_002817_060--Hb_000347_300 Hb_001828_170 Hb_001828_170 Hb_002817_060--Hb_001828_170 Hb_001511_180 Hb_001511_180 Hb_002817_060--Hb_001511_180 Hb_001329_250 Hb_001329_250 Hb_002817_060--Hb_001329_250 Hb_006839_010 Hb_006839_010 Hb_002817_060--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002817_060--Hb_000123_180 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_001951_100 Hb_001951_100 Hb_000367_020--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000154_130 Hb_000154_130 Hb_000367_020--Hb_000154_130 Hb_001054_120 Hb_001054_120 Hb_000367_020--Hb_001054_120 Hb_002025_030 Hb_002025_030 Hb_000484_010--Hb_002025_030 Hb_000183_030 Hb_000183_030 Hb_000484_010--Hb_000183_030 Hb_004917_010 Hb_004917_010 Hb_000484_010--Hb_004917_010 Hb_002609_080 Hb_002609_080 Hb_000484_010--Hb_002609_080 Hb_000392_160 Hb_000392_160 Hb_000484_010--Hb_000392_160 Hb_001377_100 Hb_001377_100 Hb_000484_010--Hb_001377_100 Hb_005701_130 Hb_005701_130 Hb_012053_090--Hb_005701_130 Hb_002328_040 Hb_002328_040 Hb_012053_090--Hb_002328_040 Hb_005488_170 Hb_005488_170 Hb_012053_090--Hb_005488_170 Hb_002600_060 Hb_002600_060 Hb_012053_090--Hb_002600_060 Hb_003607_070 Hb_003607_070 Hb_012053_090--Hb_003607_070 Hb_000059_230 Hb_000059_230 Hb_012053_090--Hb_000059_230 Hb_004374_110 Hb_004374_110 Hb_002235_200--Hb_004374_110 Hb_002235_200--Hb_003607_070 Hb_002235_200--Hb_006839_010 Hb_140627_020 Hb_140627_020 Hb_002235_200--Hb_140627_020 Hb_002235_200--Hb_000123_180 Hb_003125_170 Hb_003125_170 Hb_002235_200--Hb_003125_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.358 207.06 95.7034 200.522 66.3841 139.246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.6214 18.3951 155.851 102.668 304.188

CAGE analysis