Hb_007741_010

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig7741: 8596-11651
Sequence    

Annotation

kegg
ID tcc:TCM_005549
description Plant-specific transcription factor YABBY family protein isoform 1
nr
ID XP_012083613.1
description PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
swissprot
ID O22152
description Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
trembl
ID A0A067KAF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14555 PE=4 SV=1
Gene Ontology
ID GO:0007275
description axial regulator yabby 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57716: 9023-11759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_010 0.0 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
2 Hb_000005_160 0.0387463776 - - tonoplast intrinsic protein, putative [Ricinus communis]
3 Hb_000329_220 0.0416867536 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
4 Hb_000544_150 0.0465479481 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
5 Hb_000190_200 0.0534896737 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
6 Hb_000152_200 0.0577979203 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
7 Hb_004881_040 0.0677431477 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
8 Hb_005550_060 0.0756989495 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
9 Hb_000556_050 0.0799703428 - - -
10 Hb_162008_020 0.0849474382 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
11 Hb_177533_010 0.0850379539 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
12 Hb_004090_010 0.0858017759 - - Major latex protein, putative [Ricinus communis]
13 Hb_002045_020 0.0914750431 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
14 Hb_000005_390 0.0917657728 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
15 Hb_005198_010 0.0931456783 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
16 Hb_008642_020 0.0937500944 - - sterol desaturase, putative [Ricinus communis]
17 Hb_008252_010 0.0943318626 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
18 Hb_000023_030 0.094627479 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
19 Hb_007558_060 0.0979747414 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
20 Hb_002376_020 0.1020955722 - - lectin, partial [Lathyrus palustris]

Gene co-expression network

sample Hb_007741_010 Hb_007741_010 Hb_000005_160 Hb_000005_160 Hb_007741_010--Hb_000005_160 Hb_000329_220 Hb_000329_220 Hb_007741_010--Hb_000329_220 Hb_000544_150 Hb_000544_150 Hb_007741_010--Hb_000544_150 Hb_000190_200 Hb_000190_200 Hb_007741_010--Hb_000190_200 Hb_000152_200 Hb_000152_200 Hb_007741_010--Hb_000152_200 Hb_004881_040 Hb_004881_040 Hb_007741_010--Hb_004881_040 Hb_000005_160--Hb_000152_200 Hb_000005_160--Hb_000544_150 Hb_000023_030 Hb_000023_030 Hb_000005_160--Hb_000023_030 Hb_000556_050 Hb_000556_050 Hb_000005_160--Hb_000556_050 Hb_002045_020 Hb_002045_020 Hb_000005_160--Hb_002045_020 Hb_000329_220--Hb_000190_200 Hb_004090_010 Hb_004090_010 Hb_000329_220--Hb_004090_010 Hb_000329_220--Hb_004881_040 Hb_000329_220--Hb_000544_150 Hb_162008_020 Hb_162008_020 Hb_000329_220--Hb_162008_020 Hb_005550_060 Hb_005550_060 Hb_000544_150--Hb_005550_060 Hb_000005_390 Hb_000005_390 Hb_000544_150--Hb_000005_390 Hb_008642_020 Hb_008642_020 Hb_000544_150--Hb_008642_020 Hb_002376_020 Hb_002376_020 Hb_000544_150--Hb_002376_020 Hb_000190_200--Hb_004881_040 Hb_000190_200--Hb_162008_020 Hb_000190_200--Hb_000544_150 Hb_008252_010 Hb_008252_010 Hb_000190_200--Hb_008252_010 Hb_177533_010 Hb_177533_010 Hb_000152_200--Hb_177533_010 Hb_000152_200--Hb_000544_150 Hb_000152_200--Hb_000556_050 Hb_005198_010 Hb_005198_010 Hb_000152_200--Hb_005198_010 Hb_004881_040--Hb_000544_150 Hb_004881_040--Hb_162008_020 Hb_007157_050 Hb_007157_050 Hb_004881_040--Hb_007157_050 Hb_004881_040--Hb_008252_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 70.6393 3.39476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.50537

CAGE analysis