Hb_007741_040

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig7741: 35110-36537
Sequence    

Annotation

kegg
ID rcu:RCOM_1610740
description zinc ion binding protein, putative
nr
ID XP_012083615.1
description PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JY42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14558 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57719: 35015-36555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_040 0.0 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
2 Hb_010166_020 0.1240949216 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
3 Hb_003777_230 0.1283434897 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
4 Hb_002492_020 0.1401272586 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
5 Hb_004055_060 0.1517716746 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
6 Hb_003050_070 0.1583364144 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002835_220 0.1697657215 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
8 Hb_000603_210 0.1701019956 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
9 Hb_002260_020 0.1721329834 - - -
10 Hb_000300_400 0.1734444585 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
11 Hb_000052_010 0.1751041834 - - hypothetical protein M569_08416, partial [Genlisea aurea]
12 Hb_008705_090 0.1768637464 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
13 Hb_001266_050 0.1798769611 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
14 Hb_005539_210 0.1803125114 - - -
15 Hb_001279_250 0.1827026472 - - PREDICTED: pectate lyase-like [Jatropha curcas]
16 Hb_000714_010 0.1827241893 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
17 Hb_006745_060 0.1851717485 - - -
18 Hb_000861_050 0.1854921672 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
19 Hb_000526_020 0.1855084224 - - thioredoxin-like family protein [Hevea brasiliensis]
20 Hb_001101_010 0.1889944011 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]

Gene co-expression network

sample Hb_007741_040 Hb_007741_040 Hb_010166_020 Hb_010166_020 Hb_007741_040--Hb_010166_020 Hb_003777_230 Hb_003777_230 Hb_007741_040--Hb_003777_230 Hb_002492_020 Hb_002492_020 Hb_007741_040--Hb_002492_020 Hb_004055_060 Hb_004055_060 Hb_007741_040--Hb_004055_060 Hb_003050_070 Hb_003050_070 Hb_007741_040--Hb_003050_070 Hb_002835_220 Hb_002835_220 Hb_007741_040--Hb_002835_220 Hb_001266_050 Hb_001266_050 Hb_010166_020--Hb_001266_050 Hb_010166_020--Hb_002492_020 Hb_001198_030 Hb_001198_030 Hb_010166_020--Hb_001198_030 Hb_000052_010 Hb_000052_010 Hb_010166_020--Hb_000052_010 Hb_000526_020 Hb_000526_020 Hb_010166_020--Hb_000526_020 Hb_003777_230--Hb_000052_010 Hb_000603_210 Hb_000603_210 Hb_003777_230--Hb_000603_210 Hb_003777_230--Hb_010166_020 Hb_001007_050 Hb_001007_050 Hb_003777_230--Hb_001007_050 Hb_003777_230--Hb_004055_060 Hb_010594_030 Hb_010594_030 Hb_002492_020--Hb_010594_030 Hb_002492_020--Hb_004055_060 Hb_005539_210 Hb_005539_210 Hb_002492_020--Hb_005539_210 Hb_002492_020--Hb_001198_030 Hb_003023_050 Hb_003023_050 Hb_004055_060--Hb_003023_050 Hb_001279_250 Hb_001279_250 Hb_004055_060--Hb_001279_250 Hb_004055_060--Hb_000052_010 Hb_000580_160 Hb_000580_160 Hb_004055_060--Hb_000580_160 Hb_004055_060--Hb_010166_020 Hb_000714_010 Hb_000714_010 Hb_003050_070--Hb_000714_010 Hb_003211_050 Hb_003211_050 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_104010_010 Hb_104010_010 Hb_003050_070--Hb_104010_010 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010 Hb_002835_220--Hb_000567_280 Hb_002835_220--Hb_003777_230 Hb_000005_030 Hb_000005_030 Hb_002835_220--Hb_000005_030 Hb_001631_080 Hb_001631_080 Hb_002835_220--Hb_001631_080 Hb_002835_220--Hb_000526_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3023 0.123645 0.831194 0 3.43202 2.20579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8689 12.4611 3.16121 0.891733 0.1032

CAGE analysis