Hb_007741_050

Information

Type -
Description -
Location Contig7741: 46738-51339
Sequence    

Annotation

kegg
ID rcu:RCOM_1610730
description vesicle-associated membrane protein, putative
nr
ID XP_002511668.1
description vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q84WW5
description Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1
trembl
ID B9RD79
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1610730 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57720: 46868-51343 , PASA_asmbl_57721: 47208-47639 , PASA_asmbl_57722: 48668-49092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_050 0.0 - - vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_001257_080 0.0653821138 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007101_150 0.0713083287 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
4 Hb_000798_030 0.07308212 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
5 Hb_007479_020 0.074010676 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
6 Hb_000970_010 0.0751507262 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_001818_020 0.080077212 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
8 Hb_002518_050 0.0809124071 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
9 Hb_011794_070 0.0812082884 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
10 Hb_008173_090 0.0823333058 - - glutathione peroxidase, putative [Ricinus communis]
11 Hb_001383_060 0.0823780072 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_000099_060 0.0832974654 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
13 Hb_000134_330 0.0842959823 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
14 Hb_000545_150 0.0848413106 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
15 Hb_023732_070 0.0858990784 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
16 Hb_001584_070 0.0862002768 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000703_140 0.0871348852 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
18 Hb_011609_180 0.087435479 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
19 Hb_000883_050 0.0877598372 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
20 Hb_002205_080 0.0884890096 - - 40S ribosomal protein S26, putative [Ricinus communis]

Gene co-expression network

sample Hb_007741_050 Hb_007741_050 Hb_001257_080 Hb_001257_080 Hb_007741_050--Hb_001257_080 Hb_007101_150 Hb_007101_150 Hb_007741_050--Hb_007101_150 Hb_000798_030 Hb_000798_030 Hb_007741_050--Hb_000798_030 Hb_007479_020 Hb_007479_020 Hb_007741_050--Hb_007479_020 Hb_000970_010 Hb_000970_010 Hb_007741_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_007741_050--Hb_001818_020 Hb_002205_080 Hb_002205_080 Hb_001257_080--Hb_002205_080 Hb_001257_080--Hb_007101_150 Hb_002529_100 Hb_002529_100 Hb_001257_080--Hb_002529_100 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_001257_080--Hb_000798_030 Hb_001828_090 Hb_001828_090 Hb_007101_150--Hb_001828_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_001512_070 Hb_001512_070 Hb_007101_150--Hb_001512_070 Hb_003018_200 Hb_003018_200 Hb_007101_150--Hb_003018_200 Hb_000417_110 Hb_000417_110 Hb_000798_030--Hb_000417_110 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000634_050 Hb_000634_050 Hb_000798_030--Hb_000634_050 Hb_000045_190 Hb_000045_190 Hb_000798_030--Hb_000045_190 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120 Hb_001722_100 Hb_001722_100 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_001383_060 Hb_001383_060 Hb_007479_020--Hb_001383_060 Hb_001433_050 Hb_001433_050 Hb_007479_020--Hb_001433_050 Hb_000120_750 Hb_000120_750 Hb_007479_020--Hb_000120_750 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_000970_010--Hb_001818_020 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.4521 20.7011 37.6827 32.0299 62.5884 73.0755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.557 162.157 86.4171 31.2888 8.38522

CAGE analysis