Hb_007741_090

Information

Type -
Description -
Location Contig7741: 66352-68055
Sequence    

Annotation

kegg
ID rcu:RCOM_1610670
description gaba(A) receptor-associated protein, putative
nr
ID KHF97669.1
description Autophagy-related 8f -like protein [Gossypium arboreum]
swissprot
ID Q8VYK7
description Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1
trembl
ID I1LGN7
description Autophagy-related protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57726: 66263-66710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_090 0.0 - - Autophagy-related 8f -like protein [Gossypium arboreum]
2 Hb_007575_090 0.1169336243 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
3 Hb_000521_070 0.1555091693 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
4 Hb_000302_110 0.1649717859 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_184541_010 0.1701551252 - - PREDICTED: selT-like protein [Jatropha curcas]
6 Hb_011918_010 0.1703402805 - - hypothetical protein glysoja_041948 [Glycine soja]
7 Hb_004925_030 0.1722893896 - - EXORDIUM like 1 [Theobroma cacao]
8 Hb_001486_050 0.1725049512 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
9 Hb_004125_070 0.1890123679 - - Glycolipid transfer protein, putative [Ricinus communis]
10 Hb_000236_210 0.1922556752 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
11 Hb_004117_330 0.195115153 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002900_100 0.2045752269 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
13 Hb_008185_020 0.2080693669 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
14 Hb_002490_030 0.2177328125 - - conserved hypothetical protein [Ricinus communis]
15 Hb_066514_010 0.2189409793 - - hypothetical protein RCOM_0204720 [Ricinus communis]
16 Hb_002272_200 0.2216045018 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
17 Hb_004525_080 0.2228611186 - - Sugar transporter ERD6-like 6 [Morus notabilis]
18 Hb_001186_110 0.2234469414 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
19 Hb_074836_020 0.2272171786 - - unnamed protein product [Vitis vinifera]
20 Hb_004033_020 0.2313918619 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]

Gene co-expression network

sample Hb_007741_090 Hb_007741_090 Hb_007575_090 Hb_007575_090 Hb_007741_090--Hb_007575_090 Hb_000521_070 Hb_000521_070 Hb_007741_090--Hb_000521_070 Hb_000302_110 Hb_000302_110 Hb_007741_090--Hb_000302_110 Hb_184541_010 Hb_184541_010 Hb_007741_090--Hb_184541_010 Hb_011918_010 Hb_011918_010 Hb_007741_090--Hb_011918_010 Hb_004925_030 Hb_004925_030 Hb_007741_090--Hb_004925_030 Hb_007575_090--Hb_011918_010 Hb_066514_010 Hb_066514_010 Hb_007575_090--Hb_066514_010 Hb_002900_100 Hb_002900_100 Hb_007575_090--Hb_002900_100 Hb_007575_090--Hb_000302_110 Hb_004117_330 Hb_004117_330 Hb_007575_090--Hb_004117_330 Hb_000521_070--Hb_004925_030 Hb_000521_070--Hb_000302_110 Hb_000521_070--Hb_007575_090 Hb_002030_190 Hb_002030_190 Hb_000521_070--Hb_002030_190 Hb_000206_270 Hb_000206_270 Hb_000521_070--Hb_000206_270 Hb_000302_110--Hb_004925_030 Hb_002582_080 Hb_002582_080 Hb_000302_110--Hb_002582_080 Hb_156850_040 Hb_156850_040 Hb_000302_110--Hb_156850_040 Hb_004125_070 Hb_004125_070 Hb_184541_010--Hb_004125_070 Hb_188313_010 Hb_188313_010 Hb_184541_010--Hb_188313_010 Hb_184541_010--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_184541_010--Hb_008185_020 Hb_009083_030 Hb_009083_030 Hb_184541_010--Hb_009083_030 Hb_100137_010 Hb_100137_010 Hb_184541_010--Hb_100137_010 Hb_011918_010--Hb_066514_010 Hb_011918_010--Hb_002900_100 Hb_011918_010--Hb_004125_070 Hb_002490_030 Hb_002490_030 Hb_011918_010--Hb_002490_030 Hb_004925_030--Hb_002582_080 Hb_004925_030--Hb_156850_040 Hb_000236_210 Hb_000236_210 Hb_004925_030--Hb_000236_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.292121 0.976913 2.90875 24.6011 1.71666 2.1111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.695641 0.273801 0.395294 2.14942 0.4299

CAGE analysis