Hb_007741_100

Information

Type transcription factor
Description TF Family: GRAS
Location Contig7741: 73933-76119
Sequence    

Annotation

kegg
ID rcu:RCOM_1610560
description hypothetical protein
nr
ID XP_012083623.1
description PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
swissprot
ID O81316
description Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1
trembl
ID A0A067KAG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14565 PE=4 SV=1
Gene Ontology
ID GO:0006351
description low quality protein: scarecrow-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57728: 73573-78314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_100 0.0 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
2 Hb_001097_090 0.1163723073 - - Translation initiation factor SUI1 family protein, putative [Theobroma cacao]
3 Hb_000140_270 0.1173587411 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
4 Hb_000928_060 0.124385565 - - transporter, putative [Ricinus communis]
5 Hb_019762_050 0.1399858542 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
6 Hb_042202_060 0.1529300082 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
7 Hb_027298_010 0.1588500802 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000946_100 0.1604885719 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
9 Hb_004108_110 0.1613348535 - - conserved hypothetical protein [Ricinus communis]
10 Hb_140627_010 0.1619453041 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006153_060 0.1648980425 - - catalytic, putative [Ricinus communis]
12 Hb_000365_370 0.1674477318 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000457_290 0.1677645901 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
14 Hb_012022_170 0.1728837509 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
15 Hb_019113_020 0.1775033384 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
16 Hb_000403_070 0.1776407248 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000377_150 0.1781395941 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
18 Hb_002609_040 0.1787685114 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
19 Hb_001214_180 0.1801547138 - - -
20 Hb_002677_020 0.1803267667 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]

Gene co-expression network

sample Hb_007741_100 Hb_007741_100 Hb_001097_090 Hb_001097_090 Hb_007741_100--Hb_001097_090 Hb_000140_270 Hb_000140_270 Hb_007741_100--Hb_000140_270 Hb_000928_060 Hb_000928_060 Hb_007741_100--Hb_000928_060 Hb_019762_050 Hb_019762_050 Hb_007741_100--Hb_019762_050 Hb_042202_060 Hb_042202_060 Hb_007741_100--Hb_042202_060 Hb_027298_010 Hb_027298_010 Hb_007741_100--Hb_027298_010 Hb_001097_090--Hb_000928_060 Hb_000320_330 Hb_000320_330 Hb_001097_090--Hb_000320_330 Hb_002609_040 Hb_002609_040 Hb_001097_090--Hb_002609_040 Hb_019113_020 Hb_019113_020 Hb_001097_090--Hb_019113_020 Hb_000946_100 Hb_000946_100 Hb_001097_090--Hb_000946_100 Hb_140627_010 Hb_140627_010 Hb_000140_270--Hb_140627_010 Hb_012022_170 Hb_012022_170 Hb_000140_270--Hb_012022_170 Hb_000140_270--Hb_027298_010 Hb_000140_270--Hb_019762_050 Hb_000457_290 Hb_000457_290 Hb_000140_270--Hb_000457_290 Hb_000928_060--Hb_000946_100 Hb_002677_020 Hb_002677_020 Hb_000928_060--Hb_002677_020 Hb_001754_080 Hb_001754_080 Hb_000928_060--Hb_001754_080 Hb_008566_030 Hb_008566_030 Hb_000928_060--Hb_008566_030 Hb_019762_050--Hb_027298_010 Hb_019762_050--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_019762_050--Hb_000403_070 Hb_000032_370 Hb_000032_370 Hb_019762_050--Hb_000032_370 Hb_019762_050--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_019762_050--Hb_001575_060 Hb_002876_270 Hb_002876_270 Hb_042202_060--Hb_002876_270 Hb_001863_020 Hb_001863_020 Hb_042202_060--Hb_001863_020 Hb_006816_470 Hb_006816_470 Hb_042202_060--Hb_006816_470 Hb_001138_060 Hb_001138_060 Hb_042202_060--Hb_001138_060 Hb_005167_020 Hb_005167_020 Hb_042202_060--Hb_005167_020 Hb_010422_070 Hb_010422_070 Hb_042202_060--Hb_010422_070 Hb_000392_550 Hb_000392_550 Hb_027298_010--Hb_000392_550 Hb_027298_010--Hb_000032_370 Hb_065525_120 Hb_065525_120 Hb_027298_010--Hb_065525_120 Hb_027298_010--Hb_140627_010 Hb_009780_050 Hb_009780_050 Hb_027298_010--Hb_009780_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.32266 11.7444 13.6519 27.5336 3.32663 7.2999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2091 60.3185 45.1668 9.54259 58.3236

CAGE analysis