Hb_007741_110

Information

Type -
Description -
Location Contig7741: 82607-85948
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57730: 82650-91238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_110 0.0 - - -
2 Hb_003053_110 0.0580608254 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
3 Hb_006907_060 0.0732889865 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
4 Hb_000107_430 0.0738751871 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
5 Hb_001438_010 0.0744014372 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
6 Hb_012150_030 0.0766128856 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_002631_240 0.0797764419 - - JHL17M24.3 [Jatropha curcas]
8 Hb_073973_090 0.0811209392 - - Aminotransferase ybdL, putative [Ricinus communis]
9 Hb_004452_120 0.0830213237 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
10 Hb_000364_050 0.0842510301 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
11 Hb_007904_230 0.0857677243 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
12 Hb_010863_050 0.0874178107 - - OTU domain-containing protein 6B, putative [Ricinus communis]
13 Hb_002025_250 0.0877800225 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
14 Hb_000941_100 0.087781793 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
15 Hb_001195_770 0.0880842274 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
16 Hb_001900_140 0.0892597729 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
17 Hb_000167_110 0.0910107344 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
18 Hb_000061_180 0.0920188369 - - exonuclease, putative [Ricinus communis]
19 Hb_049575_010 0.0930699134 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
20 Hb_008705_020 0.0932222547 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007741_110 Hb_007741_110 Hb_003053_110 Hb_003053_110 Hb_007741_110--Hb_003053_110 Hb_006907_060 Hb_006907_060 Hb_007741_110--Hb_006907_060 Hb_000107_430 Hb_000107_430 Hb_007741_110--Hb_000107_430 Hb_001438_010 Hb_001438_010 Hb_007741_110--Hb_001438_010 Hb_012150_030 Hb_012150_030 Hb_007741_110--Hb_012150_030 Hb_002631_240 Hb_002631_240 Hb_007741_110--Hb_002631_240 Hb_003053_110--Hb_012150_030 Hb_000941_100 Hb_000941_100 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_006907_060--Hb_002631_240 Hb_006907_060--Hb_000941_100 Hb_006907_060--Hb_003053_110 Hb_073973_090 Hb_073973_090 Hb_006907_060--Hb_073973_090 Hb_006907_060--Hb_008705_020 Hb_006907_060--Hb_001195_770 Hb_002762_110 Hb_002762_110 Hb_000107_430--Hb_002762_110 Hb_000107_430--Hb_003053_110 Hb_007192_030 Hb_007192_030 Hb_000107_430--Hb_007192_030 Hb_000167_110 Hb_000167_110 Hb_000107_430--Hb_000167_110 Hb_004644_030 Hb_004644_030 Hb_000107_430--Hb_004644_030 Hb_001438_010--Hb_003053_110 Hb_001438_010--Hb_001195_770 Hb_001438_010--Hb_006907_060 Hb_001438_010--Hb_000941_100 Hb_000529_180 Hb_000529_180 Hb_001438_010--Hb_000529_180 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_012150_030--Hb_000941_100 Hb_011671_260 Hb_011671_260 Hb_002631_240--Hb_011671_260 Hb_002631_240--Hb_073973_090 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_000537_100 Hb_000537_100 Hb_002631_240--Hb_000537_100 Hb_005946_040 Hb_005946_040 Hb_002631_240--Hb_005946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51065 2.97817 10.3259 7.34237 3.6924 2.81407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.84065 6.32946 4.52464 4.98001 11.9861

CAGE analysis