Hb_007741_170

Information

Type transcription factor
Description TF Family: C2H2
Location Contig7741: 138142-140088
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14460g
description POPTRDRAFT_755135; zinc finger family protein
nr
ID XP_012083630.1
description PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
swissprot
ID Q9M202
description Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1
trembl
ID A0A067JXW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14572 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_170 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4-like [Jatropha curcas]
2 Hb_005298_060 0.1030154697 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Malus domestica]
3 Hb_000138_190 0.1246358821 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
4 Hb_073973_170 0.1551876467 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
5 Hb_002307_050 0.1582003764 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
6 Hb_027380_040 0.1697912246 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
7 Hb_002078_430 0.1705209206 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
8 Hb_004137_030 0.1725073288 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002619_010 0.1812265569 - - -
10 Hb_007545_210 0.1849539537 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
11 Hb_004994_310 0.1877756034 - - Kiwellin, putative [Ricinus communis]
12 Hb_003636_090 0.1917769895 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
13 Hb_000065_070 0.1921972203 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
14 Hb_002960_120 0.1929835884 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
15 Hb_001956_050 0.1951464347 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
16 Hb_000714_020 0.1952829673 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
17 Hb_000590_090 0.195915845 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_000997_260 0.1975072777 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
19 Hb_000028_470 0.1994899147 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
20 Hb_011609_030 0.2038289945 - - conserved hypothetical protein 13 [Hevea brasiliensis]

Gene co-expression network

sample Hb_007741_170 Hb_007741_170 Hb_005298_060 Hb_005298_060 Hb_007741_170--Hb_005298_060 Hb_000138_190 Hb_000138_190 Hb_007741_170--Hb_000138_190 Hb_073973_170 Hb_073973_170 Hb_007741_170--Hb_073973_170 Hb_002307_050 Hb_002307_050 Hb_007741_170--Hb_002307_050 Hb_027380_040 Hb_027380_040 Hb_007741_170--Hb_027380_040 Hb_002078_430 Hb_002078_430 Hb_007741_170--Hb_002078_430 Hb_005298_060--Hb_027380_040 Hb_005298_060--Hb_000138_190 Hb_004738_090 Hb_004738_090 Hb_005298_060--Hb_004738_090 Hb_178968_150 Hb_178968_150 Hb_005298_060--Hb_178968_150 Hb_001140_160 Hb_001140_160 Hb_005298_060--Hb_001140_160 Hb_002025_230 Hb_002025_230 Hb_000138_190--Hb_002025_230 Hb_031042_040 Hb_031042_040 Hb_000138_190--Hb_031042_040 Hb_001195_110 Hb_001195_110 Hb_000138_190--Hb_001195_110 Hb_003636_090 Hb_003636_090 Hb_000138_190--Hb_003636_090 Hb_004137_030 Hb_004137_030 Hb_073973_170--Hb_004137_030 Hb_002619_010 Hb_002619_010 Hb_073973_170--Hb_002619_010 Hb_001956_050 Hb_001956_050 Hb_073973_170--Hb_001956_050 Hb_000714_020 Hb_000714_020 Hb_073973_170--Hb_000714_020 Hb_001405_050 Hb_001405_050 Hb_073973_170--Hb_001405_050 Hb_073973_170--Hb_027380_040 Hb_002307_050--Hb_002078_430 Hb_002307_050--Hb_005298_060 Hb_002307_050--Hb_004137_030 Hb_011609_030 Hb_011609_030 Hb_002307_050--Hb_011609_030 Hb_002307_050--Hb_002619_010 Hb_004286_040 Hb_004286_040 Hb_027380_040--Hb_004286_040 Hb_006120_200 Hb_006120_200 Hb_027380_040--Hb_006120_200 Hb_027380_040--Hb_004137_030 Hb_027380_040--Hb_002619_010 Hb_002078_430--Hb_000714_020 Hb_000038_130 Hb_000038_130 Hb_002078_430--Hb_000038_130 Hb_002078_430--Hb_011609_030 Hb_004232_010 Hb_004232_010 Hb_002078_430--Hb_004232_010 Hb_005741_020 Hb_005741_020 Hb_002078_430--Hb_005741_020 Hb_002078_430--Hb_003636_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.787 1.99774 33.9916 4.14171 37.5852 72.018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.9822 26.8857 28.6757 4.30575 1.30992

CAGE analysis