Hb_007747_050

Information

Type -
Description -
Location Contig7747: 42803-48466
Sequence    

Annotation

kegg
ID rcu:RCOM_1259280
description Peptidyl-prolyl cis-trans isomerase cypE, putative (EC:5.2.1.8)
nr
ID XP_002530534.1
description Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
swissprot
ID Q9SIH1
description Peptidyl-prolyl cis-trans isomerase CYP18-2 OS=Arabidopsis thaliana GN=CYP18-2 PE=2 SV=1
trembl
ID B9SX15
description Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_1259280 PE=3 SV=1
Gene Ontology
ID GO:0005829
description peptidyl-prolyl cis-trans isomerase cyp18-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57737: 42859-48349
cDNA
(Sanger)
(ID:Location)		 019_F03.ab1: 42945-48349

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_050 0.0 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
2 Hb_002811_170 0.0514911674 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
3 Hb_000419_020 0.0566025293 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000735_090 0.0643904633 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
5 Hb_003494_050 0.0718342964 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
6 Hb_000085_350 0.0721123421 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
7 Hb_001863_430 0.0750670986 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
8 Hb_000155_160 0.0807940471 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
9 Hb_000836_470 0.0826300054 - - -
10 Hb_000136_260 0.0878880581 - - 40S ribosomal protein S5A [Hevea brasiliensis]
11 Hb_000538_120 0.0928582875 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
12 Hb_001931_010 0.094214702 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
13 Hb_028396_010 0.094863733 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
14 Hb_000136_350 0.0950769942 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
15 Hb_001728_030 0.0953612841 - - 60S ribosomal protein L15 [Populus trichocarpa]
16 Hb_007928_030 0.0973292322 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
17 Hb_001279_080 0.0995706846 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
18 Hb_000946_090 0.0997287905 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
19 Hb_000465_390 0.100988082 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
20 Hb_000169_040 0.1014779146 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007747_050 Hb_007747_050 Hb_002811_170 Hb_002811_170 Hb_007747_050--Hb_002811_170 Hb_000419_020 Hb_000419_020 Hb_007747_050--Hb_000419_020 Hb_000735_090 Hb_000735_090 Hb_007747_050--Hb_000735_090 Hb_003494_050 Hb_003494_050 Hb_007747_050--Hb_003494_050 Hb_000085_350 Hb_000085_350 Hb_007747_050--Hb_000085_350 Hb_001863_430 Hb_001863_430 Hb_007747_050--Hb_001863_430 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_002811_170--Hb_001863_430 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_001016_150 Hb_001016_150 Hb_002811_170--Hb_001016_150 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_000155_160 Hb_000155_160 Hb_000419_020--Hb_000155_160 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_001989_090 Hb_001989_090 Hb_000735_090--Hb_001989_090 Hb_007065_010 Hb_007065_010 Hb_000735_090--Hb_007065_010 Hb_000735_090--Hb_003494_050 Hb_000016_080 Hb_000016_080 Hb_000735_090--Hb_000016_080 Hb_000735_090--Hb_000085_350 Hb_006573_020 Hb_006573_020 Hb_003494_050--Hb_006573_020 Hb_001373_060 Hb_001373_060 Hb_003494_050--Hb_001373_060 Hb_005269_080 Hb_005269_080 Hb_003494_050--Hb_005269_080 Hb_003494_050--Hb_002811_170 Hb_000538_120 Hb_000538_120 Hb_000085_350--Hb_000538_120 Hb_000085_350--Hb_000155_160 Hb_000302_140 Hb_000302_140 Hb_000085_350--Hb_000302_140 Hb_000085_350--Hb_002811_170 Hb_001863_430--Hb_001016_150 Hb_000506_070 Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_002078_140 Hb_002078_140 Hb_001863_430--Hb_002078_140 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230 Hb_001691_140 Hb_001691_140 Hb_001863_430--Hb_001691_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1054 8.59524 19.693 21.4474 10.7819 12.9225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9848 56.4205 14.493 23.3577 17.6888

CAGE analysis