Hb_007747_070

Information

Type -
Description -
Location Contig7747: 53018-57040
Sequence    

Annotation

kegg
ID rcu:RCOM_1259250
description hypothetical protein
nr
ID XP_012074433.1
description PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
swissprot
ID B9SX12
description Casparian strip membrane protein 1 OS=Ricinus communis GN=RCOM_1259250 PE=2 SV=1
trembl
ID A0A067KWI4
description CASP-like protein OS=Jatropha curcas GN=JCGZ_08833 PE=3 SV=1
Gene Ontology
ID GO:0005886
description integral membrane family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_070 0.0 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
2 Hb_009385_010 0.0297941845 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
3 Hb_007894_040 0.0315200617 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
4 Hb_021142_030 0.0318052732 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
5 Hb_012146_010 0.0372906765 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
6 Hb_001410_040 0.0381088743 - - Protein ABIL2, putative [Ricinus communis]
7 Hb_008821_030 0.0446686766 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
8 Hb_055877_010 0.0468635077 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_004788_030 0.0508451859 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
10 Hb_006083_010 0.0717483466 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
11 Hb_071654_010 0.0813967461 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
12 Hb_019429_020 0.0895152153 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001117_020 0.0903942194 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
14 Hb_000371_030 0.0968002221 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
15 Hb_100395_010 0.0993994276 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_003847_090 0.0997779605 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
17 Hb_000045_290 0.1040209739 - - -
18 Hb_004241_140 0.108734799 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
19 Hb_012400_020 0.1146634881 - - Spotted leaf protein, putative [Ricinus communis]
20 Hb_005649_070 0.1172348391 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007747_070 Hb_007747_070 Hb_009385_010 Hb_009385_010 Hb_007747_070--Hb_009385_010 Hb_007894_040 Hb_007894_040 Hb_007747_070--Hb_007894_040 Hb_021142_030 Hb_021142_030 Hb_007747_070--Hb_021142_030 Hb_012146_010 Hb_012146_010 Hb_007747_070--Hb_012146_010 Hb_001410_040 Hb_001410_040 Hb_007747_070--Hb_001410_040 Hb_008821_030 Hb_008821_030 Hb_007747_070--Hb_008821_030 Hb_009385_010--Hb_001410_040 Hb_009385_010--Hb_021142_030 Hb_004788_030 Hb_004788_030 Hb_009385_010--Hb_004788_030 Hb_009385_010--Hb_008821_030 Hb_006083_010 Hb_006083_010 Hb_009385_010--Hb_006083_010 Hb_007894_040--Hb_012146_010 Hb_055877_010 Hb_055877_010 Hb_007894_040--Hb_055877_010 Hb_007894_040--Hb_021142_030 Hb_007894_040--Hb_009385_010 Hb_071654_010 Hb_071654_010 Hb_007894_040--Hb_071654_010 Hb_021142_030--Hb_001410_040 Hb_021142_030--Hb_004788_030 Hb_021142_030--Hb_008821_030 Hb_012146_010--Hb_055877_010 Hb_012146_010--Hb_071654_010 Hb_012146_010--Hb_021142_030 Hb_012146_010--Hb_009385_010 Hb_001410_040--Hb_004788_030 Hb_001410_040--Hb_008821_030 Hb_001410_040--Hb_006083_010 Hb_008821_030--Hb_004788_030 Hb_019429_020 Hb_019429_020 Hb_008821_030--Hb_019429_020 Hb_001117_020 Hb_001117_020 Hb_008821_030--Hb_001117_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0164109 0.0450796 0.0152495 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis