Hb_007747_090

Information

Type -
Description -
Location Contig7747: 76861-79125
Sequence    

Annotation

kegg
ID rcu:RCOM_1259230
description RNA binding protein, putative
nr
ID XP_012074400.1
description PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08831 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57742: 76874-79076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_090 0.0 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
2 Hb_143813_010 0.0648058904 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
3 Hb_000260_050 0.0678851285 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
4 Hb_000318_380 0.0709886777 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
5 Hb_000045_130 0.0807210627 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
6 Hb_001369_650 0.081130052 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
7 Hb_000977_080 0.0813751543 - - type II inositol 5-phosphatase, putative [Ricinus communis]
8 Hb_000152_430 0.0819227811 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
9 Hb_001477_110 0.0845440171 - - prohibitin, putative [Ricinus communis]
10 Hb_001235_210 0.0849425121 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_004899_220 0.0859192497 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
12 Hb_002307_030 0.0872628927 - - 40S ribosomal protein S15D [Hevea brasiliensis]
13 Hb_002311_350 0.0879524687 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
14 Hb_011805_080 0.0885686566 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
15 Hb_004297_100 0.0894346195 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
16 Hb_000483_160 0.0897414854 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
17 Hb_002374_490 0.0910011264 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001019_090 0.0925732587 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_003001_060 0.0975070416 - - wound-responsive family protein [Populus trichocarpa]
20 Hb_000531_020 0.0976212465 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]

Gene co-expression network

sample Hb_007747_090 Hb_007747_090 Hb_143813_010 Hb_143813_010 Hb_007747_090--Hb_143813_010 Hb_000260_050 Hb_000260_050 Hb_007747_090--Hb_000260_050 Hb_000318_380 Hb_000318_380 Hb_007747_090--Hb_000318_380 Hb_000045_130 Hb_000045_130 Hb_007747_090--Hb_000045_130 Hb_001369_650 Hb_001369_650 Hb_007747_090--Hb_001369_650 Hb_000977_080 Hb_000977_080 Hb_007747_090--Hb_000977_080 Hb_000510_090 Hb_000510_090 Hb_143813_010--Hb_000510_090 Hb_001246_100 Hb_001246_100 Hb_143813_010--Hb_001246_100 Hb_003120_060 Hb_003120_060 Hb_143813_010--Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_143813_010--Hb_000019_230 Hb_001221_230 Hb_001221_230 Hb_143813_010--Hb_001221_230 Hb_000483_160 Hb_000483_160 Hb_000260_050--Hb_000483_160 Hb_004899_220 Hb_004899_220 Hb_000260_050--Hb_004899_220 Hb_002477_240 Hb_002477_240 Hb_000260_050--Hb_002477_240 Hb_000260_050--Hb_000977_080 Hb_001754_150 Hb_001754_150 Hb_000260_050--Hb_001754_150 Hb_000152_430 Hb_000152_430 Hb_000318_380--Hb_000152_430 Hb_001824_070 Hb_001824_070 Hb_000318_380--Hb_001824_070 Hb_000928_240 Hb_000928_240 Hb_000318_380--Hb_000928_240 Hb_001477_110 Hb_001477_110 Hb_000318_380--Hb_001477_110 Hb_011139_020 Hb_011139_020 Hb_000318_380--Hb_011139_020 Hb_000045_130--Hb_000977_080 Hb_003551_020 Hb_003551_020 Hb_000045_130--Hb_003551_020 Hb_000045_130--Hb_001369_650 Hb_000392_270 Hb_000392_270 Hb_000045_130--Hb_000392_270 Hb_005489_130 Hb_005489_130 Hb_000045_130--Hb_005489_130 Hb_000045_130--Hb_000019_230 Hb_001369_650--Hb_000392_270 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_001369_650--Hb_003001_060 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_000977_080--Hb_000392_270 Hb_000977_080--Hb_003551_020 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_000977_080--Hb_000019_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4693 4.41487 3.20138 3.34746 15.004 20.9413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8906 25.8382 11.1044 6.94725 1.2027

CAGE analysis