Hb_007747_190

Information

Type -
Description -
Location Contig7747: 156550-156738
Sequence    

Annotation

kegg
ID rcu:RCOM_1258600
description hypothetical protein
nr
ID XP_002530516.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWZ7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1258600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57756: 156392-156696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003602_050 0.1814479345 - - zinc binding dehydrogenase, putative [Ricinus communis]
3 Hb_003086_120 0.1920648894 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
4 Hb_000703_260 0.2243221231 - - N-acetylglucosamine kinase, putative [Ricinus communis]
5 Hb_000227_130 0.2436104696 - - PREDICTED: peroxiredoxin-2F, mitochondrial [Jatropha curcas]
6 Hb_150379_010 0.2469014298 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
7 Hb_075136_010 0.248464572 - - Protein SSU72, putative [Ricinus communis]
8 Hb_099387_010 0.2582696096 - - -
9 Hb_002078_060 0.2586065117 - - hypothetical protein JCGZ_17943 [Jatropha curcas]
10 Hb_001950_120 0.263397917 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
11 Hb_005935_010 0.2639436626 - - -
12 Hb_002626_020 0.2649992334 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
13 Hb_000329_770 0.2711846856 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002289_090 0.2721850086 - - cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
15 Hb_000347_510 0.2724109492 - - actin binding protein, putative [Ricinus communis]
16 Hb_000062_420 0.2727538135 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000931_010 0.2740008625 - - conserved hypothetical protein [Ricinus communis]
18 Hb_021888_060 0.2747067299 - - PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Jatropha curcas]
19 Hb_116349_170 0.2757780863 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
20 Hb_000493_010 0.2769039196 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]

Gene co-expression network

sample Hb_007747_190 Hb_007747_190 Hb_003602_050 Hb_003602_050 Hb_007747_190--Hb_003602_050 Hb_003086_120 Hb_003086_120 Hb_007747_190--Hb_003086_120 Hb_000703_260 Hb_000703_260 Hb_007747_190--Hb_000703_260 Hb_000227_130 Hb_000227_130 Hb_007747_190--Hb_000227_130 Hb_150379_010 Hb_150379_010 Hb_007747_190--Hb_150379_010 Hb_075136_010 Hb_075136_010 Hb_007747_190--Hb_075136_010 Hb_000847_140 Hb_000847_140 Hb_003602_050--Hb_000847_140 Hb_000563_270 Hb_000563_270 Hb_003602_050--Hb_000563_270 Hb_012305_120 Hb_012305_120 Hb_003602_050--Hb_012305_120 Hb_007532_040 Hb_007532_040 Hb_003602_050--Hb_007532_040 Hb_003602_050--Hb_003086_120 Hb_001969_010 Hb_001969_010 Hb_003086_120--Hb_001969_010 Hb_000449_040 Hb_000449_040 Hb_003086_120--Hb_000449_040 Hb_003086_120--Hb_000227_130 Hb_000096_060 Hb_000096_060 Hb_003086_120--Hb_000096_060 Hb_003687_020 Hb_003687_020 Hb_000703_260--Hb_003687_020 Hb_006502_080 Hb_006502_080 Hb_000703_260--Hb_006502_080 Hb_000656_100 Hb_000656_100 Hb_000703_260--Hb_000656_100 Hb_001789_130 Hb_001789_130 Hb_000703_260--Hb_001789_130 Hb_002849_040 Hb_002849_040 Hb_000703_260--Hb_002849_040 Hb_000703_260--Hb_150379_010 Hb_001950_120 Hb_001950_120 Hb_000227_130--Hb_001950_120 Hb_116349_170 Hb_116349_170 Hb_000227_130--Hb_116349_170 Hb_003680_070 Hb_003680_070 Hb_000227_130--Hb_003680_070 Hb_000487_320 Hb_000487_320 Hb_000227_130--Hb_000487_320 Hb_000227_130--Hb_000449_040 Hb_003226_160 Hb_003226_160 Hb_000227_130--Hb_003226_160 Hb_000931_010 Hb_000931_010 Hb_150379_010--Hb_000931_010 Hb_001009_300 Hb_001009_300 Hb_150379_010--Hb_001009_300 Hb_184403_020 Hb_184403_020 Hb_150379_010--Hb_184403_020 Hb_020000_010 Hb_020000_010 Hb_150379_010--Hb_020000_010 Hb_004800_120 Hb_004800_120 Hb_150379_010--Hb_004800_120 Hb_001019_040 Hb_001019_040 Hb_150379_010--Hb_001019_040 Hb_000413_160 Hb_000413_160 Hb_075136_010--Hb_000413_160 Hb_075136_010--Hb_000703_260 Hb_075136_010--Hb_006502_080 Hb_075136_010--Hb_002849_040 Hb_005731_140 Hb_005731_140 Hb_075136_010--Hb_005731_140 Hb_000648_030 Hb_000648_030 Hb_075136_010--Hb_000648_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.99201 0 0 0 1.23694 29.898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5661 17.3147 6.62939 9.97266 4.98058

CAGE analysis