Hb_007747_210

Information

Type -
Description -
Location Contig7747: 159986-168276
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07500g
description POPTRDRAFT_825192; hypothetical protein
nr
ID CBI30348.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P54968
description IAA-amino acid hydrolase ILR1 OS=Arabidopsis thaliana GN=ILR1 PE=1 SV=2
trembl
ID A0A0D9WXA3
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0005783
description iaa-amino acid hydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57760: 160068-162027 , PASA_asmbl_57761: 162219-168183
cDNA
(Sanger)
(ID:Location)		 004_J12.ab1: 163411-168180 , 034_P20.ab1: 160984-162024

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_210 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_042202_030 0.0888501586 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
3 Hb_079312_010 0.112473617 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005237_050 0.1133745229 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
5 Hb_009455_020 0.11649976 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
6 Hb_000215_070 0.1189141845 - - PREDICTED: uncharacterized protein LOC105119782 isoform X1 [Populus euphratica]
7 Hb_003020_220 0.1205428422 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
8 Hb_003467_030 0.1222061348 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
9 Hb_003688_150 0.1241662618 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
10 Hb_002799_070 0.1246814926 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
11 Hb_000465_190 0.1274361365 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
12 Hb_003734_110 0.1290315263 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
13 Hb_003768_030 0.1315806446 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
14 Hb_002338_050 0.1319785256 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
15 Hb_086639_040 0.135023995 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
16 Hb_103118_010 0.1352242538 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
17 Hb_011386_020 0.135383217 - - unnamed protein product [Vitis vinifera]
18 Hb_003291_010 0.1359740903 - - ATP-dependent protease La, putative [Ricinus communis]
19 Hb_070256_010 0.1361098521 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
20 Hb_005116_050 0.1361306724 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007747_210 Hb_007747_210 Hb_042202_030 Hb_042202_030 Hb_007747_210--Hb_042202_030 Hb_079312_010 Hb_079312_010 Hb_007747_210--Hb_079312_010 Hb_005237_050 Hb_005237_050 Hb_007747_210--Hb_005237_050 Hb_009455_020 Hb_009455_020 Hb_007747_210--Hb_009455_020 Hb_000215_070 Hb_000215_070 Hb_007747_210--Hb_000215_070 Hb_003020_220 Hb_003020_220 Hb_007747_210--Hb_003020_220 Hb_000020_120 Hb_000020_120 Hb_042202_030--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_042202_030--Hb_003688_150 Hb_002799_070 Hb_002799_070 Hb_042202_030--Hb_002799_070 Hb_042202_030--Hb_079312_010 Hb_000116_430 Hb_000116_430 Hb_042202_030--Hb_000116_430 Hb_009803_050 Hb_009803_050 Hb_079312_010--Hb_009803_050 Hb_012423_030 Hb_012423_030 Hb_079312_010--Hb_012423_030 Hb_079312_010--Hb_003020_220 Hb_079312_010--Hb_003688_150 Hb_003768_030 Hb_003768_030 Hb_079312_010--Hb_003768_030 Hb_000603_080 Hb_000603_080 Hb_079312_010--Hb_000603_080 Hb_005237_050--Hb_003020_220 Hb_006420_050 Hb_006420_050 Hb_005237_050--Hb_006420_050 Hb_001049_110 Hb_001049_110 Hb_005237_050--Hb_001049_110 Hb_005116_050 Hb_005116_050 Hb_005237_050--Hb_005116_050 Hb_082609_010 Hb_082609_010 Hb_005237_050--Hb_082609_010 Hb_018133_090 Hb_018133_090 Hb_005237_050--Hb_018133_090 Hb_000003_710 Hb_000003_710 Hb_009455_020--Hb_000003_710 Hb_000340_100 Hb_000340_100 Hb_009455_020--Hb_000340_100 Hb_000152_110 Hb_000152_110 Hb_009455_020--Hb_000152_110 Hb_004052_170 Hb_004052_170 Hb_009455_020--Hb_004052_170 Hb_009455_020--Hb_002799_070 Hb_000215_070--Hb_005116_050 Hb_005253_030 Hb_005253_030 Hb_000215_070--Hb_005253_030 Hb_000665_130 Hb_000665_130 Hb_000215_070--Hb_000665_130 Hb_015941_020 Hb_015941_020 Hb_000215_070--Hb_015941_020 Hb_001257_010 Hb_001257_010 Hb_000215_070--Hb_001257_010 Hb_001589_010 Hb_001589_010 Hb_000215_070--Hb_001589_010 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_003020_220--Hb_082609_010 Hb_000510_290 Hb_000510_290 Hb_003020_220--Hb_000510_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6564 16.8113 12.2103 11.8068 18.6598 16.6197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.9115 33.9363 42.3558 36.0903 61.7821

CAGE analysis