Hb_007749_020

Information

Type -
Description -
Location Contig7749: 42218-43112
Sequence    

Annotation

kegg
ID rcu:RCOM_0814340
description receptor-kinase, putative (EC:1.3.1.74)
nr
ID XP_002518813.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID Q84MA9
description Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana GN=At1g60630 PE=2 SV=1
trembl
ID B9RY46
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0814340 PE=4 SV=1
Gene Ontology
ID GO:0016021
description inactive leucine-rich repeat receptor-like serine threonine-protein kinase at1g60630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57762: 20822-43306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007749_020 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_001675_290 0.1052402515 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
3 Hb_036029_020 0.1172056414 - - PREDICTED: patellin-3-like [Jatropha curcas]
4 Hb_003529_240 0.1280725236 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
5 Hb_000172_230 0.133199637 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
6 Hb_107658_010 0.138665621 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
7 Hb_002272_200 0.1473271714 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
8 Hb_007163_050 0.148589364 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
9 Hb_000010_220 0.1492677869 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
10 Hb_006026_020 0.15321428 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
11 Hb_000011_260 0.1562121965 - - conserved hypothetical protein [Ricinus communis]
12 Hb_049915_010 0.1568139158 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
13 Hb_000532_150 0.1649000483 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
14 Hb_001369_190 0.1650525306 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
15 Hb_001675_310 0.1657627594 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
16 Hb_000563_630 0.1663583872 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
17 Hb_033053_020 0.1671438972 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
18 Hb_071433_010 0.1675716578 - - lipid binding protein, putative [Ricinus communis]
19 Hb_003055_080 0.1713152077 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
20 Hb_004031_050 0.1716809394 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_007749_020 Hb_007749_020 Hb_001675_290 Hb_001675_290 Hb_007749_020--Hb_001675_290 Hb_036029_020 Hb_036029_020 Hb_007749_020--Hb_036029_020 Hb_003529_240 Hb_003529_240 Hb_007749_020--Hb_003529_240 Hb_000172_230 Hb_000172_230 Hb_007749_020--Hb_000172_230 Hb_107658_010 Hb_107658_010 Hb_007749_020--Hb_107658_010 Hb_002272_200 Hb_002272_200 Hb_007749_020--Hb_002272_200 Hb_001675_290--Hb_036029_020 Hb_001369_190 Hb_001369_190 Hb_001675_290--Hb_001369_190 Hb_006026_020 Hb_006026_020 Hb_001675_290--Hb_006026_020 Hb_077694_020 Hb_077694_020 Hb_001675_290--Hb_077694_020 Hb_004970_100 Hb_004970_100 Hb_001675_290--Hb_004970_100 Hb_071433_010 Hb_071433_010 Hb_036029_020--Hb_071433_010 Hb_036029_020--Hb_000172_230 Hb_002597_030 Hb_002597_030 Hb_036029_020--Hb_002597_030 Hb_036029_020--Hb_004970_100 Hb_033053_020 Hb_033053_020 Hb_003529_240--Hb_033053_020 Hb_000563_630 Hb_000563_630 Hb_003529_240--Hb_000563_630 Hb_002235_370 Hb_002235_370 Hb_003529_240--Hb_002235_370 Hb_001675_310 Hb_001675_310 Hb_003529_240--Hb_001675_310 Hb_004659_100 Hb_004659_100 Hb_003529_240--Hb_004659_100 Hb_000172_230--Hb_001675_290 Hb_008643_020 Hb_008643_020 Hb_000172_230--Hb_008643_020 Hb_076771_010 Hb_076771_010 Hb_000172_230--Hb_076771_010 Hb_000172_230--Hb_001675_310 Hb_000011_260 Hb_000011_260 Hb_107658_010--Hb_000011_260 Hb_150573_010 Hb_150573_010 Hb_107658_010--Hb_150573_010 Hb_107658_010--Hb_001369_190 Hb_107658_010--Hb_036029_020 Hb_004732_070 Hb_004732_070 Hb_107658_010--Hb_004732_070 Hb_004453_060 Hb_004453_060 Hb_107658_010--Hb_004453_060 Hb_002490_030 Hb_002490_030 Hb_002272_200--Hb_002490_030 Hb_002749_040 Hb_002749_040 Hb_002272_200--Hb_002749_040 Hb_000260_110 Hb_000260_110 Hb_002272_200--Hb_000260_110 Hb_066514_010 Hb_066514_010 Hb_002272_200--Hb_066514_010 Hb_000302_100 Hb_000302_100 Hb_002272_200--Hb_000302_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08355 8.64862 9.88058 26.1935 1.15402 0.366228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.498309 0.130576 0.116244 2.84473 2.44761

CAGE analysis