Hb_007753_020

Information

Type -
Description -
Location Contig7753: 24779-25738
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57765: 24868-35312
cDNA
(Sanger)
(ID:Location)		 043_N11.ab1: 24868-35312

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007753_020 0.0 - - -
2 Hb_140572_010 0.1770803051 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
3 Hb_000951_040 0.2482184677 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
4 Hb_011640_020 0.2564804718 - - hypothetical protein VITISV_036432 [Vitis vinifera]
5 Hb_006344_010 0.2623595539 - - -
6 Hb_001195_390 0.2653084821 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
7 Hb_013925_010 0.2685676542 - - RecName: Full=Pro-hevein; AltName: Full=Major hevein; Contains: RecName: Full=Hevein; AltName: Allergen=Hev b 6; Contains: RecName: Full=Win-like protein; Flags: Precursor [Hevea brasiliensis]
8 Hb_001012_020 0.271267847 transcription factor TF Family: M-type unnamed protein product [Coffea canephora]
9 Hb_000445_080 0.2727540738 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
10 Hb_005935_010 0.2728066588 - - -
11 Hb_007753_010 0.273722147 - - -
12 Hb_006198_050 0.2769316747 - - protein with unknown function [Ricinus communis]
13 Hb_116681_010 0.2796384287 - - hypothetical protein PRUPE_ppa025968mg, partial [Prunus persica]
14 Hb_002687_050 0.2891269069 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
15 Hb_000421_190 0.2904626091 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002243_040 0.2949665704 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
17 Hb_001021_060 0.2956160556 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000457_160 0.3059777907 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
19 Hb_002890_230 0.310170961 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
20 Hb_002626_020 0.3103331942 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_007753_020 Hb_007753_020 Hb_140572_010 Hb_140572_010 Hb_007753_020--Hb_140572_010 Hb_000951_040 Hb_000951_040 Hb_007753_020--Hb_000951_040 Hb_011640_020 Hb_011640_020 Hb_007753_020--Hb_011640_020 Hb_006344_010 Hb_006344_010 Hb_007753_020--Hb_006344_010 Hb_001195_390 Hb_001195_390 Hb_007753_020--Hb_001195_390 Hb_013925_010 Hb_013925_010 Hb_007753_020--Hb_013925_010 Hb_140572_010--Hb_006344_010 Hb_001021_060 Hb_001021_060 Hb_140572_010--Hb_001021_060 Hb_140572_010--Hb_001195_390 Hb_000445_080 Hb_000445_080 Hb_140572_010--Hb_000445_080 Hb_123521_010 Hb_123521_010 Hb_140572_010--Hb_123521_010 Hb_007753_010 Hb_007753_010 Hb_000951_040--Hb_007753_010 Hb_000421_190 Hb_000421_190 Hb_000951_040--Hb_000421_190 Hb_004871_050 Hb_004871_050 Hb_000951_040--Hb_004871_050 Hb_001396_230 Hb_001396_230 Hb_000951_040--Hb_001396_230 Hb_008516_020 Hb_008516_020 Hb_000951_040--Hb_008516_020 Hb_001153_220 Hb_001153_220 Hb_000951_040--Hb_001153_220 Hb_006198_050 Hb_006198_050 Hb_011640_020--Hb_006198_050 Hb_000457_160 Hb_000457_160 Hb_011640_020--Hb_000457_160 Hb_000380_180 Hb_000380_180 Hb_011640_020--Hb_000380_180 Hb_103873_010 Hb_103873_010 Hb_011640_020--Hb_103873_010 Hb_000907_100 Hb_000907_100 Hb_011640_020--Hb_000907_100 Hb_006602_010 Hb_006602_010 Hb_011640_020--Hb_006602_010 Hb_006344_010--Hb_001021_060 Hb_006344_010--Hb_001195_390 Hb_004413_030 Hb_004413_030 Hb_006344_010--Hb_004413_030 Hb_001277_310 Hb_001277_310 Hb_006344_010--Hb_001277_310 Hb_135624_010 Hb_135624_010 Hb_006344_010--Hb_135624_010 Hb_002243_040 Hb_002243_040 Hb_001195_390--Hb_002243_040 Hb_001195_390--Hb_013925_010 Hb_046440_010 Hb_046440_010 Hb_001195_390--Hb_046440_010 Hb_000160_200 Hb_000160_200 Hb_001195_390--Hb_000160_200 Hb_116681_010 Hb_116681_010 Hb_013925_010--Hb_116681_010 Hb_001425_120 Hb_001425_120 Hb_013925_010--Hb_001425_120 Hb_130788_010 Hb_130788_010 Hb_013925_010--Hb_130788_010 Hb_013925_010--Hb_002243_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2172 0 0 0 0.674232 56.6315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.76177 5.91333 36.8067 4.43926 0

CAGE analysis