Hb_007757_090

Information

Type -
Description -
Location Contig7757: 46989-51187
Sequence    

Annotation

kegg
ID fve:101301707
description ribonuclease HI-like
nr
ID XP_012477839.1
description PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A068V1I5
description Coffea canephora DH200=94 genomic scaffold, scaffold_82 OS=Coffea canephora GN=GSCOC_T00040726001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007757_090 0.0 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
2 Hb_006261_010 0.0064137398 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
3 Hb_005625_050 0.0077966824 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
4 Hb_019299_050 0.0296272118 - - -
5 Hb_000946_020 0.0413277835 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
6 Hb_169597_010 0.0663602479 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
7 Hb_000967_030 0.0694529871 - - -
8 Hb_003927_030 0.071559242 - - unnamed protein product [Coffea canephora]
9 Hb_000052_030 0.0728960837 - - -
10 Hb_000159_030 0.0870685852 - - putative glycosyltransferase, partial [Aralia elata]
11 Hb_159957_020 0.0887712824 - - -
12 Hb_002570_050 0.0961325209 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
13 Hb_018202_060 0.1097373167 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
14 Hb_055880_010 0.1120732158 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_093039_010 0.1144263802 - - JHL22C18.10 [Jatropha curcas]
16 Hb_009142_030 0.115060009 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_001514_160 0.1169906296 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
18 Hb_000190_130 0.1180735261 - - cysteine protease inhibitor [Populus tremula]
19 Hb_014034_010 0.1216548168 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_002890_050 0.1226181234 - - -

Gene co-expression network

sample Hb_007757_090 Hb_007757_090 Hb_006261_010 Hb_006261_010 Hb_007757_090--Hb_006261_010 Hb_005625_050 Hb_005625_050 Hb_007757_090--Hb_005625_050 Hb_019299_050 Hb_019299_050 Hb_007757_090--Hb_019299_050 Hb_000946_020 Hb_000946_020 Hb_007757_090--Hb_000946_020 Hb_169597_010 Hb_169597_010 Hb_007757_090--Hb_169597_010 Hb_000967_030 Hb_000967_030 Hb_007757_090--Hb_000967_030 Hb_006261_010--Hb_005625_050 Hb_006261_010--Hb_000946_020 Hb_006261_010--Hb_019299_050 Hb_006261_010--Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_006261_010--Hb_003927_030 Hb_005625_050--Hb_019299_050 Hb_005625_050--Hb_000946_020 Hb_005625_050--Hb_000967_030 Hb_005625_050--Hb_169597_010 Hb_019299_050--Hb_000967_030 Hb_000159_030 Hb_000159_030 Hb_019299_050--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_019299_050--Hb_159957_020 Hb_000946_020--Hb_169597_010 Hb_000946_020--Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_000946_020--Hb_000052_030 Hb_169597_010--Hb_003927_030 Hb_169597_010--Hb_000052_030 Hb_002570_050 Hb_002570_050 Hb_169597_010--Hb_002570_050 Hb_093039_010 Hb_093039_010 Hb_169597_010--Hb_093039_010 Hb_000190_130 Hb_000190_130 Hb_169597_010--Hb_000190_130 Hb_000967_030--Hb_000159_030 Hb_000967_030--Hb_159957_020 Hb_055880_010 Hb_055880_010 Hb_000967_030--Hb_055880_010 Hb_009142_030 Hb_009142_030 Hb_000967_030--Hb_009142_030 Hb_001514_160 Hb_001514_160 Hb_000967_030--Hb_001514_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.252004 0.134816

CAGE analysis