Hb_007757_100

Information

Type -
Description -
Location Contig7757: 51518-58501
Sequence    

Annotation

kegg
ID rcu:RCOM_0669360
description Protein pob, putative
nr
ID XP_012085023.1
description PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
swissprot
ID Q7SXW4
description ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2 SV=1
trembl
ID A0A067K3W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22252 PE=4 SV=1
Gene Ontology
ID GO:0005739
description er membrane protein complex subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57779: 51541-58467 , PASA_asmbl_57781: 56671-56885
cDNA
(Sanger)
(ID:Location)		 041_F15.ab1: 51924-58422 , 042_J14.ab1: 51878-58417

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007757_100 0.0 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
2 Hb_000181_310 0.0731859973 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
3 Hb_003580_040 0.0821433562 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
4 Hb_001279_330 0.0872230096 - - Protein bem46, putative [Ricinus communis]
5 Hb_007668_020 0.0874496685 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
6 Hb_000199_080 0.0904635733 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009913_050 0.0940612522 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
8 Hb_007534_040 0.0952483252 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
9 Hb_011644_020 0.1004780487 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
10 Hb_079326_010 0.1026110678 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
11 Hb_000540_140 0.1029534915 - - zinc binding dehydrogenase, putative [Ricinus communis]
12 Hb_000165_130 0.1033127553 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
13 Hb_000392_280 0.1051993379 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
14 Hb_002942_080 0.1055791044 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
15 Hb_003716_020 0.1059928008 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
16 Hb_000849_100 0.107686576 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
17 Hb_004218_070 0.1088650729 - - annexin [Manihot esculenta]
18 Hb_004143_070 0.1089053336 - - cytochrome P450, putative [Ricinus communis]
19 Hb_003666_050 0.1096553456 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
20 Hb_000345_530 0.11016791 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007757_100 Hb_007757_100 Hb_000181_310 Hb_000181_310 Hb_007757_100--Hb_000181_310 Hb_003580_040 Hb_003580_040 Hb_007757_100--Hb_003580_040 Hb_001279_330 Hb_001279_330 Hb_007757_100--Hb_001279_330 Hb_007668_020 Hb_007668_020 Hb_007757_100--Hb_007668_020 Hb_000199_080 Hb_000199_080 Hb_007757_100--Hb_000199_080 Hb_009913_050 Hb_009913_050 Hb_007757_100--Hb_009913_050 Hb_003666_050 Hb_003666_050 Hb_000181_310--Hb_003666_050 Hb_000181_310--Hb_003580_040 Hb_000540_140 Hb_000540_140 Hb_000181_310--Hb_000540_140 Hb_004143_070 Hb_004143_070 Hb_000181_310--Hb_004143_070 Hb_000181_310--Hb_009913_050 Hb_003580_040--Hb_003666_050 Hb_000608_340 Hb_000608_340 Hb_003580_040--Hb_000608_340 Hb_019871_020 Hb_019871_020 Hb_003580_040--Hb_019871_020 Hb_001195_030 Hb_001195_030 Hb_003580_040--Hb_001195_030 Hb_000424_230 Hb_000424_230 Hb_001279_330--Hb_000424_230 Hb_004218_070 Hb_004218_070 Hb_001279_330--Hb_004218_070 Hb_005368_010 Hb_005368_010 Hb_001279_330--Hb_005368_010 Hb_005271_080 Hb_005271_080 Hb_001279_330--Hb_005271_080 Hb_008406_140 Hb_008406_140 Hb_001279_330--Hb_008406_140 Hb_001278_060 Hb_001278_060 Hb_007668_020--Hb_001278_060 Hb_005129_050 Hb_005129_050 Hb_007668_020--Hb_005129_050 Hb_000213_070 Hb_000213_070 Hb_007668_020--Hb_000213_070 Hb_003581_020 Hb_003581_020 Hb_007668_020--Hb_003581_020 Hb_003716_020 Hb_003716_020 Hb_007668_020--Hb_003716_020 Hb_007668_020--Hb_000199_080 Hb_079326_010 Hb_079326_010 Hb_000199_080--Hb_079326_010 Hb_000199_080--Hb_003581_020 Hb_000199_080--Hb_008406_140 Hb_002159_040 Hb_002159_040 Hb_000199_080--Hb_002159_040 Hb_005214_060 Hb_005214_060 Hb_009913_050--Hb_005214_060 Hb_002942_080 Hb_002942_080 Hb_009913_050--Hb_002942_080 Hb_000318_140 Hb_000318_140 Hb_009913_050--Hb_000318_140 Hb_001396_290 Hb_001396_290 Hb_009913_050--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_009913_050--Hb_002048_090 Hb_025557_020 Hb_025557_020 Hb_009913_050--Hb_025557_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.841 24.8598 35.3747 29.4855 155.577 134.458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.9673 23.9153 21.8249 21.6774 17.164

CAGE analysis