Hb_007760_020

Information

Type -
Description -
Location Contig7760: 33998-35487
Sequence    

Annotation

kegg
ID rcu:RCOM_0837240
description Alpha-expansin 1 precursor, putative
nr
ID XP_011013147.1
description PREDICTED: expansin-A1 [Populus euphratica]
swissprot
ID Q9C554
description Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1
trembl
ID B9S8Y8
description Alpha-expansin 1, putative OS=Ricinus communis GN=RCOM_0837240 PE=3 SV=1
Gene Ontology
ID GO:0005576
description alpha-expansin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57805: 34016-35513
cDNA
(Sanger)
(ID:Location)		 009_B07.ab1: 34016-34823 , 038_H06.ab1: 34016-35009 , 043_F22.ab1: 34016-34983

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007760_020 0.0 - - PREDICTED: expansin-A1 [Populus euphratica]
2 Hb_005116_150 0.0637136917 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
3 Hb_009151_010 0.0876589262 - - Peroxidase 3 [Morus notabilis]
4 Hb_010142_060 0.1008746604 - - Blue copper protein precursor, putative [Ricinus communis]
5 Hb_001534_140 0.1046354823 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
6 Hb_009252_070 0.1122402241 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
7 Hb_000531_030 0.1128779875 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002311_030 0.1146511121 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001584_270 0.1152480979 - - conserved hypothetical protein [Ricinus communis]
10 Hb_057862_010 0.1175024981 - - protein binding protein, putative [Ricinus communis]
11 Hb_011344_040 0.1195319365 - - PREDICTED: 21 kDa protein [Jatropha curcas]
12 Hb_004531_160 0.1197406892 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
13 Hb_007113_060 0.1209111438 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
14 Hb_138585_010 0.1217153909 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
15 Hb_000368_050 0.1230623291 - - beta-galactosidase, putative [Ricinus communis]
16 Hb_011709_010 0.1248907164 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
17 Hb_005269_060 0.125304023 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]
18 Hb_000676_230 0.1260754828 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
19 Hb_058471_020 0.1262423069 - - PREDICTED: expansin-B3-like [Jatropha curcas]
20 Hb_010193_020 0.1262655909 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007760_020 Hb_007760_020 Hb_005116_150 Hb_005116_150 Hb_007760_020--Hb_005116_150 Hb_009151_010 Hb_009151_010 Hb_007760_020--Hb_009151_010 Hb_010142_060 Hb_010142_060 Hb_007760_020--Hb_010142_060 Hb_001534_140 Hb_001534_140 Hb_007760_020--Hb_001534_140 Hb_009252_070 Hb_009252_070 Hb_007760_020--Hb_009252_070 Hb_000531_030 Hb_000531_030 Hb_007760_020--Hb_000531_030 Hb_005116_150--Hb_009151_010 Hb_005116_150--Hb_000531_030 Hb_007113_060 Hb_007113_060 Hb_005116_150--Hb_007113_060 Hb_002311_030 Hb_002311_030 Hb_005116_150--Hb_002311_030 Hb_005116_150--Hb_010142_060 Hb_009151_010--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_009151_010--Hb_004162_200 Hb_002067_070 Hb_002067_070 Hb_009151_010--Hb_002067_070 Hb_009151_010--Hb_007113_060 Hb_009151_010--Hb_000531_030 Hb_010142_060--Hb_001534_140 Hb_004531_160 Hb_004531_160 Hb_010142_060--Hb_004531_160 Hb_000676_230 Hb_000676_230 Hb_010142_060--Hb_000676_230 Hb_000368_050 Hb_000368_050 Hb_010142_060--Hb_000368_050 Hb_004032_290 Hb_004032_290 Hb_010142_060--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_010142_060--Hb_000395_310 Hb_001534_140--Hb_000368_050 Hb_005332_160 Hb_005332_160 Hb_001534_140--Hb_005332_160 Hb_138585_010 Hb_138585_010 Hb_001534_140--Hb_138585_010 Hb_169077_030 Hb_169077_030 Hb_001534_140--Hb_169077_030 Hb_012395_060 Hb_012395_060 Hb_001534_140--Hb_012395_060 Hb_047612_010 Hb_047612_010 Hb_009252_070--Hb_047612_010 Hb_009252_070--Hb_000368_050 Hb_005269_060 Hb_005269_060 Hb_009252_070--Hb_005269_060 Hb_009252_070--Hb_138585_010 Hb_004650_110 Hb_004650_110 Hb_009252_070--Hb_004650_110 Hb_000103_440 Hb_000103_440 Hb_009252_070--Hb_000103_440 Hb_001104_060 Hb_001104_060 Hb_000531_030--Hb_001104_060 Hb_005440_040 Hb_005440_040 Hb_000531_030--Hb_005440_040 Hb_000227_360 Hb_000227_360 Hb_000531_030--Hb_000227_360 Hb_001456_030 Hb_001456_030 Hb_000531_030--Hb_001456_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.22511 0.688986 11.2084 51.3826 0.03362 0.0542872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.475005 0.093413 0 2.54361 19.4188

CAGE analysis