Hb_007760_040

Information

Type transcription factor
Description TF Family: mTERF
Location Contig7760: 53980-54846
Sequence    

Annotation

kegg
ID rcu:RCOM_0837220
description hypothetical protein
nr
ID XP_012067663.1
description PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15622 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mterf domain containing identical

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57810: 53953-55127
cDNA
(Sanger)
(ID:Location)		 030_K07.ab1: 53953-54136

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007760_040 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
2 Hb_000840_180 0.0899157558 - - protein BOLA2 [Jatropha curcas]
3 Hb_003038_240 0.0991018949 - - conserved hypothetical protein [Ricinus communis]
4 Hb_018133_020 0.1002012549 - - transporter, putative [Ricinus communis]
5 Hb_012114_070 0.1036116155 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
6 Hb_007220_010 0.1141936942 - - PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Jatropha curcas]
7 Hb_001279_080 0.1159154919 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
8 Hb_005162_060 0.1162859847 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
9 Hb_028486_030 0.1174290333 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
10 Hb_004127_020 0.1209369476 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
11 Hb_003849_150 0.1214438406 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
12 Hb_004143_150 0.1217670769 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
13 Hb_007441_330 0.1227572032 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
14 Hb_000261_020 0.1250663718 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
15 Hb_000001_060 0.1257228826 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
16 Hb_000336_150 0.1261801448 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
17 Hb_032208_070 0.1264085987 - - PREDICTED: probable polyamine transporter At3g13620 isoform X2 [Jatropha curcas]
18 Hb_001318_260 0.1266706174 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
19 Hb_158445_010 0.1270828084 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
20 Hb_004899_370 0.127173106 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]

Gene co-expression network

sample Hb_007760_040 Hb_007760_040 Hb_000840_180 Hb_000840_180 Hb_007760_040--Hb_000840_180 Hb_003038_240 Hb_003038_240 Hb_007760_040--Hb_003038_240 Hb_018133_020 Hb_018133_020 Hb_007760_040--Hb_018133_020 Hb_012114_070 Hb_012114_070 Hb_007760_040--Hb_012114_070 Hb_007220_010 Hb_007220_010 Hb_007760_040--Hb_007220_010 Hb_001279_080 Hb_001279_080 Hb_007760_040--Hb_001279_080 Hb_000169_040 Hb_000169_040 Hb_000840_180--Hb_000169_040 Hb_004127_020 Hb_004127_020 Hb_000840_180--Hb_004127_020 Hb_002798_020 Hb_002798_020 Hb_000840_180--Hb_002798_020 Hb_004459_040 Hb_004459_040 Hb_000840_180--Hb_004459_040 Hb_026053_020 Hb_026053_020 Hb_000840_180--Hb_026053_020 Hb_000996_140 Hb_000996_140 Hb_000840_180--Hb_000996_140 Hb_003038_240--Hb_012114_070 Hb_005162_060 Hb_005162_060 Hb_003038_240--Hb_005162_060 Hb_003124_150 Hb_003124_150 Hb_003038_240--Hb_003124_150 Hb_158445_010 Hb_158445_010 Hb_003038_240--Hb_158445_010 Hb_000729_030 Hb_000729_030 Hb_003038_240--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003038_240--Hb_000336_150 Hb_131181_010 Hb_131181_010 Hb_018133_020--Hb_131181_010 Hb_018133_020--Hb_026053_020 Hb_018133_020--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_018133_020--Hb_001318_260 Hb_018133_020--Hb_012114_070 Hb_018133_020--Hb_000840_180 Hb_000155_200 Hb_000155_200 Hb_012114_070--Hb_000155_200 Hb_000614_220 Hb_000614_220 Hb_012114_070--Hb_000614_220 Hb_000614_160 Hb_000614_160 Hb_012114_070--Hb_000614_160 Hb_004157_020 Hb_004157_020 Hb_012114_070--Hb_004157_020 Hb_007220_010--Hb_000169_040 Hb_007304_090 Hb_007304_090 Hb_007220_010--Hb_007304_090 Hb_028486_030 Hb_028486_030 Hb_007220_010--Hb_028486_030 Hb_007220_010--Hb_000840_180 Hb_007220_010--Hb_001318_260 Hb_000327_060 Hb_000327_060 Hb_007220_010--Hb_000327_060 Hb_008071_020 Hb_008071_020 Hb_001279_080--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_001279_080--Hb_001931_010 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.532 10.1069 10.4877 13.5442 9.68934 6.61838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8089 33.3857 14.4418 4.45413 18.548

CAGE analysis