Hb_007760_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig7760: 75425-77184
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17470g
description POPTRDRAFT_567031; hypothetical protein
nr
ID XP_002315045.2
description hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9HXZ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s17470g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor myb44 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57811: 76378-77044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007760_060 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
2 Hb_000127_240 0.0373712895 - - SAUR39 [Populus tomentosa]
3 Hb_000375_100 0.0434569782 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
4 Hb_007576_090 0.043461322 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
5 Hb_000010_430 0.0509939225 - - Esterase precursor, putative [Ricinus communis]
6 Hb_180535_010 0.0521497076 - - -
7 Hb_072952_010 0.0552205803 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
8 Hb_002030_010 0.0594243522 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
9 Hb_061336_010 0.0624890105 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006614_020 0.0625547277 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_000816_180 0.0664727198 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
12 Hb_000375_220 0.0793932101 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
13 Hb_007218_050 0.0808075348 - - zinc finger protein, putative [Ricinus communis]
14 Hb_002307_140 0.0832717069 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
15 Hb_000258_400 0.0849849588 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
16 Hb_007044_240 0.0881494471 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
17 Hb_028486_020 0.0896799594 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000073_040 0.0936995382 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
19 Hb_004128_150 0.0959528903 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
20 Hb_008686_040 0.1009161905 - - PREDICTED: uncharacterized protein LOC105632278 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007760_060 Hb_007760_060 Hb_000127_240 Hb_000127_240 Hb_007760_060--Hb_000127_240 Hb_000375_100 Hb_000375_100 Hb_007760_060--Hb_000375_100 Hb_007576_090 Hb_007576_090 Hb_007760_060--Hb_007576_090 Hb_000010_430 Hb_000010_430 Hb_007760_060--Hb_000010_430 Hb_180535_010 Hb_180535_010 Hb_007760_060--Hb_180535_010 Hb_072952_010 Hb_072952_010 Hb_007760_060--Hb_072952_010 Hb_002030_010 Hb_002030_010 Hb_000127_240--Hb_002030_010 Hb_006614_020 Hb_006614_020 Hb_000127_240--Hb_006614_020 Hb_000375_220 Hb_000375_220 Hb_000127_240--Hb_000375_220 Hb_000127_240--Hb_007576_090 Hb_000127_240--Hb_180535_010 Hb_000375_100--Hb_000010_430 Hb_000375_100--Hb_072952_010 Hb_000375_100--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_000375_100--Hb_061336_010 Hb_028486_020 Hb_028486_020 Hb_000375_100--Hb_028486_020 Hb_007576_090--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_007576_090--Hb_000816_180 Hb_007576_090--Hb_061336_010 Hb_007576_090--Hb_072952_010 Hb_007218_050 Hb_007218_050 Hb_007576_090--Hb_007218_050 Hb_000010_430--Hb_072952_010 Hb_000010_430--Hb_007576_090 Hb_000010_430--Hb_061336_010 Hb_000010_430--Hb_028486_020 Hb_180535_010--Hb_000816_180 Hb_180535_010--Hb_061336_010 Hb_180535_010--Hb_007218_050 Hb_002307_140 Hb_002307_140 Hb_180535_010--Hb_002307_140 Hb_180535_010--Hb_072952_010 Hb_072952_010--Hb_061336_010 Hb_072952_010--Hb_000816_180 Hb_000258_400 Hb_000258_400 Hb_072952_010--Hb_000258_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.900504 0.528258 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.177865

CAGE analysis