Hb_007763_040

Information

Type -
Description -
Location Contig7763: 39145-43722
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0A8XVG3
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57815: 39212-64518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007763_040 0.0 - - -
2 Hb_000670_020 0.0853677937 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
3 Hb_003683_050 0.0891508187 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
4 Hb_010368_020 0.0915130535 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
5 Hb_005016_090 0.0931064545 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
6 Hb_000714_030 0.0968189977 - - Nucleosome assembly [Gossypium arboreum]
7 Hb_001564_130 0.0994497632 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_001195_760 0.1012611625 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
9 Hb_000735_180 0.1054664439 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
10 Hb_001348_070 0.1058299958 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_001586_040 0.1091413519 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
12 Hb_001234_080 0.109715598 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
13 Hb_000251_070 0.1098990797 - - hypothetical protein L484_010641 [Morus notabilis]
14 Hb_021443_070 0.1108807941 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
15 Hb_001481_170 0.1114014596 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007576_040 0.1130169478 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
17 Hb_028227_020 0.1135980548 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
18 Hb_001936_080 0.1140436757 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
19 Hb_005618_160 0.1147995578 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
20 Hb_001329_130 0.1152506383 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007763_040 Hb_007763_040 Hb_000670_020 Hb_000670_020 Hb_007763_040--Hb_000670_020 Hb_003683_050 Hb_003683_050 Hb_007763_040--Hb_003683_050 Hb_010368_020 Hb_010368_020 Hb_007763_040--Hb_010368_020 Hb_005016_090 Hb_005016_090 Hb_007763_040--Hb_005016_090 Hb_000714_030 Hb_000714_030 Hb_007763_040--Hb_000714_030 Hb_001564_130 Hb_001564_130 Hb_007763_040--Hb_001564_130 Hb_003292_040 Hb_003292_040 Hb_000670_020--Hb_003292_040 Hb_000670_020--Hb_001564_130 Hb_000670_020--Hb_003683_050 Hb_001348_070 Hb_001348_070 Hb_000670_020--Hb_001348_070 Hb_011970_030 Hb_011970_030 Hb_000670_020--Hb_011970_030 Hb_000670_020--Hb_010368_020 Hb_001481_170 Hb_001481_170 Hb_003683_050--Hb_001481_170 Hb_001195_760 Hb_001195_760 Hb_003683_050--Hb_001195_760 Hb_001936_080 Hb_001936_080 Hb_003683_050--Hb_001936_080 Hb_003683_050--Hb_011970_030 Hb_000085_180 Hb_000085_180 Hb_003683_050--Hb_000085_180 Hb_010368_020--Hb_005016_090 Hb_010368_020--Hb_001564_130 Hb_000771_080 Hb_000771_080 Hb_010368_020--Hb_000771_080 Hb_010368_020--Hb_001348_070 Hb_010368_020--Hb_001195_760 Hb_005016_090--Hb_001564_130 Hb_002346_020 Hb_002346_020 Hb_005016_090--Hb_002346_020 Hb_001586_040 Hb_001586_040 Hb_005016_090--Hb_001586_040 Hb_005016_090--Hb_003683_050 Hb_000742_140 Hb_000742_140 Hb_000714_030--Hb_000742_140 Hb_000457_110 Hb_000457_110 Hb_000714_030--Hb_000457_110 Hb_009767_120 Hb_009767_120 Hb_000714_030--Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_000714_030--Hb_000933_180 Hb_000098_190 Hb_000098_190 Hb_000714_030--Hb_000098_190 Hb_000465_040 Hb_000465_040 Hb_000714_030--Hb_000465_040 Hb_001564_130--Hb_003292_040 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_001564_130--Hb_011970_030 Hb_001564_130--Hb_001348_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8097 8.84116 21.4447 11.602 37.8015 23.1603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.9537 32.1303 15.2937 4.79395 13.2974

CAGE analysis