Hb_007763_060

Information

Type -
Description -
Location Contig7763: 62433-64339
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDY41129.1
description BnaA02g23510D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078HUV4
description BnaA02g23510D protein OS=Brassica napus GN=BnaA02g23510D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57815: 39212-64518 , PASA_asmbl_57816: 62182-63911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007763_060 0.0 - - BnaA02g23510D [Brassica napus]
2 Hb_006487_060 0.115200614 - - Defective in cullin neddylation protein, putative [Ricinus communis]
3 Hb_008096_030 0.1273439045 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
4 Hb_152554_010 0.1326075405 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
5 Hb_028420_020 0.1330957131 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
6 Hb_168973_010 0.1354890575 - - -
7 Hb_002482_060 0.1377822988 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
8 Hb_006663_090 0.142455073 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
9 Hb_002660_050 0.1442694264 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
10 Hb_136731_010 0.1450287337 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
11 Hb_002259_160 0.1456242709 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
12 Hb_005085_030 0.1458006982 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
13 Hb_000436_080 0.1460678429 - - unnamed protein product [Coffea canephora]
14 Hb_003688_110 0.1479584512 - - -
15 Hb_006198_080 0.1493438392 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
16 Hb_041205_010 0.1502124015 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000648_030 0.1515390106 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
18 Hb_001504_080 0.1517967981 - - golgi snare 11 protein, putative [Ricinus communis]
19 Hb_001260_030 0.1533169733 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004060_030 0.1533713856 - - PREDICTED: primase homolog protein [Jatropha curcas]

Gene co-expression network

sample Hb_007763_060 Hb_007763_060 Hb_006487_060 Hb_006487_060 Hb_007763_060--Hb_006487_060 Hb_008096_030 Hb_008096_030 Hb_007763_060--Hb_008096_030 Hb_152554_010 Hb_152554_010 Hb_007763_060--Hb_152554_010 Hb_028420_020 Hb_028420_020 Hb_007763_060--Hb_028420_020 Hb_168973_010 Hb_168973_010 Hb_007763_060--Hb_168973_010 Hb_002482_060 Hb_002482_060 Hb_007763_060--Hb_002482_060 Hb_006487_060--Hb_152554_010 Hb_000176_120 Hb_000176_120 Hb_006487_060--Hb_000176_120 Hb_006663_090 Hb_006663_090 Hb_006487_060--Hb_006663_090 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_000825_030 Hb_000825_030 Hb_006487_060--Hb_000825_030 Hb_008096_030--Hb_168973_010 Hb_002445_120 Hb_002445_120 Hb_008096_030--Hb_002445_120 Hb_021238_050 Hb_021238_050 Hb_008096_030--Hb_021238_050 Hb_066768_010 Hb_066768_010 Hb_008096_030--Hb_066768_010 Hb_001250_060 Hb_001250_060 Hb_008096_030--Hb_001250_060 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_000812_040 Hb_000812_040 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_152554_010--Hb_000176_120 Hb_003912_090 Hb_003912_090 Hb_028420_020--Hb_003912_090 Hb_028420_020--Hb_021238_050 Hb_005862_010 Hb_005862_010 Hb_028420_020--Hb_005862_010 Hb_020665_040 Hb_020665_040 Hb_028420_020--Hb_020665_040 Hb_005016_050 Hb_005016_050 Hb_028420_020--Hb_005016_050 Hb_003038_210 Hb_003038_210 Hb_028420_020--Hb_003038_210 Hb_115477_010 Hb_115477_010 Hb_168973_010--Hb_115477_010 Hb_115107_010 Hb_115107_010 Hb_168973_010--Hb_115107_010 Hb_005023_030 Hb_005023_030 Hb_168973_010--Hb_005023_030 Hb_000074_060 Hb_000074_060 Hb_168973_010--Hb_000074_060 Hb_000120_190 Hb_000120_190 Hb_002482_060--Hb_000120_190 Hb_005731_140 Hb_005731_140 Hb_002482_060--Hb_005731_140 Hb_166480_010 Hb_166480_010 Hb_002482_060--Hb_166480_010 Hb_006198_090 Hb_006198_090 Hb_002482_060--Hb_006198_090 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1533 8.10314 14.9558 65.3188 27.739 146.379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.3031 43.7316 50.0094 19.3621 26.031

CAGE analysis