Hb_007765_060

Information

Type -
Description -
Location Contig7765: 41851-44225
Sequence    

Annotation

kegg
ID tcc:TCM_041691
description Proliferating cell nuclear antigen
nr
ID XP_007016210.1
description Proliferating cell nuclear antigen [Theobroma cacao]
swissprot
ID O82797
description Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1
trembl
ID A0A061GZY2
description Proliferating cell nuclear antigen OS=Theobroma cacao GN=TCM_041691 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proliferating cell nuclear antigen

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57828: 41977-44125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007765_060 0.0 - - Proliferating cell nuclear antigen [Theobroma cacao]
2 Hb_000740_070 0.1159580275 - - -
3 Hb_005725_070 0.1446023745 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000487_100 0.1451228614 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
5 Hb_001956_050 0.1469211606 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
6 Hb_000544_040 0.1498992587 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
7 Hb_004117_030 0.1574802003 - - PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
8 Hb_185467_010 0.1580120925 - - -
9 Hb_003878_120 0.1591649964 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
10 Hb_000465_120 0.1593058719 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
11 Hb_007416_200 0.1612640248 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
12 Hb_000281_010 0.161396 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
13 Hb_000849_150 0.1614988794 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
14 Hb_001498_030 0.1624448795 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
15 Hb_007164_020 0.1633893174 - - hypothetical protein glysoja_025872 [Glycine soja]
16 Hb_001001_020 0.1638003116 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
17 Hb_000453_190 0.164564871 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
18 Hb_001160_120 0.164596352 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001504_150 0.1650517528 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
20 Hb_000805_260 0.1659674951 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007765_060 Hb_007765_060 Hb_000740_070 Hb_000740_070 Hb_007765_060--Hb_000740_070 Hb_005725_070 Hb_005725_070 Hb_007765_060--Hb_005725_070 Hb_000487_100 Hb_000487_100 Hb_007765_060--Hb_000487_100 Hb_001956_050 Hb_001956_050 Hb_007765_060--Hb_001956_050 Hb_000544_040 Hb_000544_040 Hb_007765_060--Hb_000544_040 Hb_004117_030 Hb_004117_030 Hb_007765_060--Hb_004117_030 Hb_001474_030 Hb_001474_030 Hb_000740_070--Hb_001474_030 Hb_003656_160 Hb_003656_160 Hb_000740_070--Hb_003656_160 Hb_005701_040 Hb_005701_040 Hb_000740_070--Hb_005701_040 Hb_001504_150 Hb_001504_150 Hb_000740_070--Hb_001504_150 Hb_004678_020 Hb_004678_020 Hb_000740_070--Hb_004678_020 Hb_007164_020 Hb_007164_020 Hb_000740_070--Hb_007164_020 Hb_012977_010 Hb_012977_010 Hb_005725_070--Hb_012977_010 Hb_001498_030 Hb_001498_030 Hb_005725_070--Hb_001498_030 Hb_002025_140 Hb_002025_140 Hb_005725_070--Hb_002025_140 Hb_002818_040 Hb_002818_040 Hb_005725_070--Hb_002818_040 Hb_005314_010 Hb_005314_010 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010 Hb_003125_060 Hb_003125_060 Hb_000487_100--Hb_003125_060 Hb_080147_030 Hb_080147_030 Hb_000487_100--Hb_080147_030 Hb_000685_080 Hb_000685_080 Hb_000487_100--Hb_000685_080 Hb_005725_020 Hb_005725_020 Hb_000487_100--Hb_005725_020 Hb_000487_100--Hb_000740_070 Hb_005399_020 Hb_005399_020 Hb_000487_100--Hb_005399_020 Hb_000714_020 Hb_000714_020 Hb_001956_050--Hb_000714_020 Hb_011930_010 Hb_011930_010 Hb_001956_050--Hb_011930_010 Hb_011609_030 Hb_011609_030 Hb_001956_050--Hb_011609_030 Hb_004137_030 Hb_004137_030 Hb_001956_050--Hb_004137_030 Hb_007416_200 Hb_007416_200 Hb_001956_050--Hb_007416_200 Hb_003813_200 Hb_003813_200 Hb_001956_050--Hb_003813_200 Hb_000849_150 Hb_000849_150 Hb_000544_040--Hb_000849_150 Hb_000544_040--Hb_005725_070 Hb_007305_010 Hb_007305_010 Hb_000544_040--Hb_007305_010 Hb_000300_540 Hb_000300_540 Hb_000544_040--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000544_040--Hb_007786_010 Hb_000173_370 Hb_000173_370 Hb_000544_040--Hb_000173_370 Hb_000890_040 Hb_000890_040 Hb_004117_030--Hb_000890_040 Hb_063100_010 Hb_063100_010 Hb_004117_030--Hb_063100_010 Hb_004117_030--Hb_000740_070 Hb_004117_030--Hb_007164_020 Hb_001486_080 Hb_001486_080 Hb_004117_030--Hb_001486_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.346 40.5554 46.7722 17.004 103.008 60.2034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7666 27.4251 59.2202 14.6173 3.33769

CAGE analysis