Hb_007765_080

Information

Type -
Description -
Location Contig7765: 54117-56482
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04570g
description POPTRDRAFT_650190; hypothetical protein
nr
ID XP_012068394.1
description PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08535 PE=4 SV=1
Gene Ontology
ID GO:0007020
description glucose-6-phosphate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57830: 54132-56363 , PASA_asmbl_57831: 54126-58167
cDNA
(Sanger)
(ID:Location)		 022_B17.ab1: 55751-58167 , 038_M22.ab1: 55503-56363

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007765_080 0.0 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
2 Hb_116349_030 0.0530117249 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
3 Hb_001619_150 0.0720017934 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
4 Hb_000855_020 0.0769030962 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
5 Hb_000574_440 0.0776683322 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
6 Hb_000260_440 0.0808311489 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
7 Hb_028308_010 0.0808482359 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
8 Hb_007558_120 0.0820142027 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_006816_050 0.0840870649 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
10 Hb_000107_400 0.0843552632 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
11 Hb_011618_080 0.0853818845 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
12 Hb_001195_560 0.0860473248 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
13 Hb_004635_050 0.0861814662 - - nucleolar phosphoprotein, putative [Ricinus communis]
14 Hb_001369_130 0.0867349852 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
15 Hb_002686_250 0.0870362642 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
16 Hb_000002_490 0.0872608399 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
17 Hb_006831_110 0.0874921215 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
18 Hb_000777_050 0.0878401884 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
19 Hb_003680_230 0.0883530461 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
20 Hb_002042_140 0.089548198 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]

Gene co-expression network

sample Hb_007765_080 Hb_007765_080 Hb_116349_030 Hb_116349_030 Hb_007765_080--Hb_116349_030 Hb_001619_150 Hb_001619_150 Hb_007765_080--Hb_001619_150 Hb_000855_020 Hb_000855_020 Hb_007765_080--Hb_000855_020 Hb_000574_440 Hb_000574_440 Hb_007765_080--Hb_000574_440 Hb_000260_440 Hb_000260_440 Hb_007765_080--Hb_000260_440 Hb_028308_010 Hb_028308_010 Hb_007765_080--Hb_028308_010 Hb_000107_400 Hb_000107_400 Hb_116349_030--Hb_000107_400 Hb_116349_030--Hb_000574_440 Hb_116349_030--Hb_000855_020 Hb_008695_020 Hb_008695_020 Hb_116349_030--Hb_008695_020 Hb_000003_290 Hb_000003_290 Hb_116349_030--Hb_000003_290 Hb_002092_080 Hb_002092_080 Hb_001619_150--Hb_002092_080 Hb_001619_150--Hb_028308_010 Hb_011618_080 Hb_011618_080 Hb_001619_150--Hb_011618_080 Hb_001619_150--Hb_000855_020 Hb_004912_030 Hb_004912_030 Hb_001619_150--Hb_004912_030 Hb_000671_070 Hb_000671_070 Hb_000855_020--Hb_000671_070 Hb_000855_020--Hb_004912_030 Hb_089140_050 Hb_089140_050 Hb_000855_020--Hb_089140_050 Hb_002835_230 Hb_002835_230 Hb_000855_020--Hb_002835_230 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_143766_110 Hb_143766_110 Hb_000260_440--Hb_143766_110 Hb_000777_050 Hb_000777_050 Hb_000260_440--Hb_000777_050 Hb_014361_150 Hb_014361_150 Hb_000260_440--Hb_014361_150 Hb_000291_060 Hb_000291_060 Hb_000260_440--Hb_000291_060 Hb_001635_040 Hb_001635_040 Hb_000260_440--Hb_001635_040 Hb_028308_010--Hb_000777_050 Hb_001195_560 Hb_001195_560 Hb_028308_010--Hb_001195_560 Hb_009296_010 Hb_009296_010 Hb_028308_010--Hb_009296_010 Hb_000333_060 Hb_000333_060 Hb_028308_010--Hb_000333_060 Hb_002398_030 Hb_002398_030 Hb_028308_010--Hb_002398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.2055 42.3116 33.2887 27.9938 60.1838 37.0262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.797 13.724 28.4064 21.9941 28.139

CAGE analysis