Hb_007765_110

Information

Type -
Description -
Location Contig7765: 97717-102029
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04630g
description POPTRDRAFT_1088232; hypothetical protein
nr
ID XP_012076257.1
description PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
swissprot
ID Q5SNN4
description Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1
trembl
ID A0A067KH31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12817 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 40-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57836: 97763-102020 , PASA_asmbl_57837: 99727-99892 , PASA_asmbl_57838: 100455-101710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007765_110 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
2 Hb_003464_090 0.0563539907 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
3 Hb_007163_120 0.0573071408 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
4 Hb_000868_090 0.058543628 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
5 Hb_033772_030 0.0607793573 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
6 Hb_003370_030 0.0662473048 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
7 Hb_011491_010 0.070906712 - - Protein YME1, putative [Ricinus communis]
8 Hb_012779_090 0.0715220946 - - PREDICTED: lipase member N [Jatropha curcas]
9 Hb_020831_030 0.0725198323 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000049_260 0.0728894611 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000614_210 0.0731667179 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
12 Hb_001723_020 0.0737368236 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
13 Hb_008959_020 0.0741288941 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
14 Hb_002217_170 0.0745098598 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
15 Hb_000886_050 0.0746671648 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
16 Hb_162275_050 0.0747908393 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
17 Hb_000318_250 0.0748639768 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]
18 Hb_002818_030 0.0754455826 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
19 Hb_028285_010 0.0763772292 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
20 Hb_001838_060 0.0771266331 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007765_110 Hb_007765_110 Hb_003464_090 Hb_003464_090 Hb_007765_110--Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_007765_110--Hb_007163_120 Hb_000868_090 Hb_000868_090 Hb_007765_110--Hb_000868_090 Hb_033772_030 Hb_033772_030 Hb_007765_110--Hb_033772_030 Hb_003370_030 Hb_003370_030 Hb_007765_110--Hb_003370_030 Hb_011491_010 Hb_011491_010 Hb_007765_110--Hb_011491_010 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007163_120--Hb_003370_030 Hb_007163_120--Hb_033772_030 Hb_007163_120--Hb_011491_010 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_019863_070 Hb_019863_070 Hb_000868_090--Hb_019863_070 Hb_002818_030 Hb_002818_030 Hb_000868_090--Hb_002818_030 Hb_000868_090--Hb_003464_090 Hb_000318_250 Hb_000318_250 Hb_000868_090--Hb_000318_250 Hb_003906_200 Hb_003906_200 Hb_000868_090--Hb_003906_200 Hb_006922_010 Hb_006922_010 Hb_033772_030--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_033772_030--Hb_002900_090 Hb_033772_030--Hb_003370_030 Hb_033772_030--Hb_003464_090 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_005000_260 Hb_005000_260 Hb_003370_030--Hb_005000_260 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003370_030--Hb_003464_090 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8794 41.1625 19.3655 22.7145 27.8288 23.2475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7531 28.1068 25.479 27.6075 18.0795

CAGE analysis