Hb_007765_130

Information

Type -
Description -
Location Contig7765: 120234-124110
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04690g
description POPTRDRAFT_833245; hypothetical protein
nr
ID XP_012068257.1
description PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
swissprot
ID Q9SS80
description UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1
trembl
ID A0A067LGS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08525 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007765_130 0.0 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
2 Hb_000042_050 0.0937400463 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
3 Hb_003055_070 0.0953415202 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
4 Hb_001365_030 0.0966303958 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
5 Hb_000005_100 0.1068500528 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
6 Hb_000679_080 0.1089847113 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
7 Hb_000093_140 0.11006291 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
8 Hb_000635_050 0.1114489789 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
9 Hb_002374_450 0.1123019119 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
10 Hb_001053_020 0.1126141914 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
11 Hb_002675_080 0.1148650011 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
12 Hb_003416_020 0.1152503423 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
13 Hb_005276_070 0.1157820505 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
14 Hb_025045_010 0.1174720522 - - catalytic, putative [Ricinus communis]
15 Hb_002662_110 0.1182873885 - - Kinesin heavy chain, putative [Ricinus communis]
16 Hb_000357_070 0.1210143025 - - -
17 Hb_024677_010 0.1213359833 - - superoxide dismutase [fe], putative [Ricinus communis]
18 Hb_010632_020 0.1222442901 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
19 Hb_034579_020 0.1230219598 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004330_020 0.1264832263 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]

Gene co-expression network

sample Hb_007765_130 Hb_007765_130 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_003055_070 Hb_003055_070 Hb_007765_130--Hb_003055_070 Hb_001365_030 Hb_001365_030 Hb_007765_130--Hb_001365_030 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_000679_080 Hb_000679_080 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140 Hb_002675_080 Hb_002675_080 Hb_000042_050--Hb_002675_080 Hb_001053_020 Hb_001053_020 Hb_000042_050--Hb_001053_020 Hb_000099_170 Hb_000099_170 Hb_000042_050--Hb_000099_170 Hb_003175_070 Hb_003175_070 Hb_000042_050--Hb_003175_070 Hb_003849_160 Hb_003849_160 Hb_000042_050--Hb_003849_160 Hb_000940_030 Hb_000940_030 Hb_003055_070--Hb_000940_030 Hb_000446_040 Hb_000446_040 Hb_003055_070--Hb_000446_040 Hb_003055_070--Hb_000005_100 Hb_003055_070--Hb_000093_140 Hb_004223_270 Hb_004223_270 Hb_003055_070--Hb_004223_270 Hb_010632_020 Hb_010632_020 Hb_001365_030--Hb_010632_020 Hb_001365_030--Hb_000940_030 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160 Hb_003053_070 Hb_003053_070 Hb_001365_030--Hb_003053_070 Hb_000005_100--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000005_100--Hb_022425_050 Hb_000976_130 Hb_000976_130 Hb_000005_100--Hb_000976_130 Hb_000005_100--Hb_001053_020 Hb_005181_120 Hb_005181_120 Hb_000679_080--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_000679_080--Hb_002811_250 Hb_010098_040 Hb_010098_040 Hb_000679_080--Hb_010098_040 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000516_080 Hb_000516_080 Hb_000679_080--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_000679_080--Hb_007982_040 Hb_004346_040 Hb_004346_040 Hb_000093_140--Hb_004346_040 Hb_003894_060 Hb_003894_060 Hb_000093_140--Hb_003894_060 Hb_005214_070 Hb_005214_070 Hb_000093_140--Hb_005214_070 Hb_004324_120 Hb_004324_120 Hb_000093_140--Hb_004324_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10533 4.02091 10.4707 7.00081 0.712212 1.52763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.496232 0.472624 0.310551 3.3482 12.7145

CAGE analysis