Hb_007777_010

Information

Type -
Description -
Location Contig7777: 1-1214
Sequence    

Annotation

kegg
ID brp:103866246
description UPF0187 protein At2g45870, chloroplastic
nr
ID XP_010544724.1
description PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
swissprot
ID O80832
description UPF0187 protein At2g45870, chloroplastic OS=Arabidopsis thaliana GN=At2g45870 PE=2 SV=1
trembl
ID A0A087H5H4
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G248600 PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0187 protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57865: 124-609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007777_010 0.0 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
2 Hb_001621_110 0.0805578536 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
3 Hb_004267_060 0.1114146902 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_152910_010 0.1141417228 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
5 Hb_000045_160 0.1150457519 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
6 Hb_000640_190 0.1153144058 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
7 Hb_010287_030 0.1167767237 - - conserved hypothetical protein [Ricinus communis]
8 Hb_054865_020 0.117059237 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
9 Hb_009659_030 0.1226946217 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
10 Hb_002259_110 0.1236982567 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
11 Hb_011609_010 0.1239250075 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
12 Hb_075203_010 0.1268377296 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
13 Hb_172257_010 0.1291888584 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
14 Hb_008165_030 0.1295872979 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
15 Hb_000062_360 0.1298003295 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
16 Hb_000302_170 0.1299218316 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
17 Hb_000300_550 0.1311688418 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
18 Hb_020805_100 0.1319096012 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
19 Hb_000803_090 0.1323242623 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
20 Hb_005873_020 0.1328977092 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_007777_010 Hb_007777_010 Hb_001621_110 Hb_001621_110 Hb_007777_010--Hb_001621_110 Hb_004267_060 Hb_004267_060 Hb_007777_010--Hb_004267_060 Hb_152910_010 Hb_152910_010 Hb_007777_010--Hb_152910_010 Hb_000045_160 Hb_000045_160 Hb_007777_010--Hb_000045_160 Hb_000640_190 Hb_000640_190 Hb_007777_010--Hb_000640_190 Hb_010287_030 Hb_010287_030 Hb_007777_010--Hb_010287_030 Hb_001621_110--Hb_004267_060 Hb_004725_030 Hb_004725_030 Hb_001621_110--Hb_004725_030 Hb_000890_010 Hb_000890_010 Hb_001621_110--Hb_000890_010 Hb_000086_430 Hb_000086_430 Hb_001621_110--Hb_000086_430 Hb_011609_010 Hb_011609_010 Hb_001621_110--Hb_011609_010 Hb_000260_770 Hb_000260_770 Hb_004267_060--Hb_000260_770 Hb_001369_030 Hb_001369_030 Hb_004267_060--Hb_001369_030 Hb_001009_120 Hb_001009_120 Hb_004267_060--Hb_001009_120 Hb_000062_360 Hb_000062_360 Hb_004267_060--Hb_000062_360 Hb_004267_060--Hb_000086_430 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_030545_030 Hb_030545_030 Hb_152910_010--Hb_030545_030 Hb_004319_050 Hb_004319_050 Hb_152910_010--Hb_004319_050 Hb_000302_170 Hb_000302_170 Hb_152910_010--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_152910_010--Hb_000300_550 Hb_152910_010--Hb_000640_190 Hb_000045_160--Hb_000640_190 Hb_011930_100 Hb_011930_100 Hb_000045_160--Hb_011930_100 Hb_033152_090 Hb_033152_090 Hb_000045_160--Hb_033152_090 Hb_088584_010 Hb_088584_010 Hb_000045_160--Hb_088584_010 Hb_002249_020 Hb_002249_020 Hb_000045_160--Hb_002249_020 Hb_000815_310 Hb_000815_310 Hb_000045_160--Hb_000815_310 Hb_000640_190--Hb_033152_090 Hb_005403_010 Hb_005403_010 Hb_000640_190--Hb_005403_010 Hb_000640_190--Hb_001009_120 Hb_000640_190--Hb_002249_020 Hb_000640_190--Hb_000300_550 Hb_004724_370 Hb_004724_370 Hb_010287_030--Hb_004724_370 Hb_010287_030--Hb_000302_170 Hb_008165_030 Hb_008165_030 Hb_010287_030--Hb_008165_030 Hb_001674_040 Hb_001674_040 Hb_010287_030--Hb_001674_040 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70751 2.55715 3.49909 1.8485 0.998962 1.05989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.198023 0.389082 0.272725 1.14794 1.20728

CAGE analysis