Hb_007778_030

Information

Type transcription factor
Description TF Family: mTERF
Location Contig7778: 47820-49031
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID XP_002529476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454380 PE=4 SV=1
Gene Ontology
ID GO:0005739
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57867: 44077-49280 , PASA_asmbl_57870: 48272-49275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007778_030 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_001269_680 0.0495149281 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
3 Hb_145880_030 0.0664445013 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
4 Hb_010407_040 0.0684497408 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
5 Hb_165132_010 0.0691635603 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
6 Hb_000163_160 0.0795782106 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
7 Hb_000160_130 0.0798054289 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
8 Hb_003687_110 0.081506375 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
9 Hb_002007_060 0.0825825166 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
10 Hb_005539_350 0.082929516 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000054_100 0.0838642955 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
12 Hb_001662_070 0.0855673376 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
13 Hb_023226_040 0.0882537484 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
14 Hb_004324_310 0.0912164459 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000635_180 0.0913440584 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
16 Hb_000000_160 0.0916905255 - - PREDICTED: membrin-11 [Jatropha curcas]
17 Hb_000840_030 0.0918260023 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
18 Hb_001936_080 0.093179907 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
19 Hb_033594_110 0.0946739889 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
20 Hb_001279_310 0.0976889173 - - hypothetical protein JCGZ_10212 [Jatropha curcas]

Gene co-expression network

sample Hb_007778_030 Hb_007778_030 Hb_001269_680 Hb_001269_680 Hb_007778_030--Hb_001269_680 Hb_145880_030 Hb_145880_030 Hb_007778_030--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_007778_030--Hb_010407_040 Hb_165132_010 Hb_165132_010 Hb_007778_030--Hb_165132_010 Hb_000163_160 Hb_000163_160 Hb_007778_030--Hb_000163_160 Hb_000160_130 Hb_000160_130 Hb_007778_030--Hb_000160_130 Hb_005539_350 Hb_005539_350 Hb_001269_680--Hb_005539_350 Hb_002007_060 Hb_002007_060 Hb_001269_680--Hb_002007_060 Hb_003001_120 Hb_003001_120 Hb_001269_680--Hb_003001_120 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_000230_200 Hb_000230_200 Hb_001269_680--Hb_000230_200 Hb_145880_030--Hb_010407_040 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_145880_030--Hb_001662_070 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_000494_020 Hb_000494_020 Hb_010407_040--Hb_000494_020 Hb_010407_040--Hb_000163_160 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_001369_660 Hb_001369_660 Hb_000163_160--Hb_001369_660 Hb_000163_160--Hb_000494_020 Hb_004800_230 Hb_004800_230 Hb_000163_160--Hb_004800_230 Hb_002105_090 Hb_002105_090 Hb_000163_160--Hb_002105_090 Hb_000163_160--Hb_000000_160 Hb_000160_130--Hb_010407_040 Hb_003018_120 Hb_003018_120 Hb_000160_130--Hb_003018_120 Hb_000160_130--Hb_145880_030 Hb_000160_130--Hb_023226_040 Hb_000160_130--Hb_000163_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.007 3.89765 6.13425 5.00402 5.39585 9.42483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7088 12.0153 7.57174 1.98303 2.22027

CAGE analysis