Hb_007785_010

Information

Type -
Description -
Location Contig7785: 20202-22442
Sequence    

Annotation

kegg
ID rcu:RCOM_1686480
description glutathione peroxidase, putative (EC:1.11.1.12)
nr
ID XP_002509791.1
description glutathione peroxidase, putative [Ricinus communis]
swissprot
ID Q8LBU2
description Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1
trembl
ID B9RCA7
description Glutathione peroxidase OS=Ricinus communis GN=RCOM_1686480 PE=3 SV=1
Gene Ontology
ID GO:0004602
description probable glutathione peroxidase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007785_010 0.0 - - glutathione peroxidase, putative [Ricinus communis]
2 Hb_003107_020 0.15362376 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
3 Hb_003640_030 0.1773741083 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
4 Hb_011716_110 0.1884875512 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
5 Hb_029977_050 0.1930437604 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
6 Hb_003073_170 0.1943183554 - - -
7 Hb_039342_010 0.1976730332 - - pyruvate decarboxylase [Hevea brasiliensis]
8 Hb_000787_190 0.1984191031 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
9 Hb_001278_040 0.1998083344 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
10 Hb_000640_130 0.2050275237 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
11 Hb_001351_040 0.2054385124 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
12 Hb_003211_010 0.2063152601 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
13 Hb_080451_010 0.20730809 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
14 Hb_011716_090 0.2108095487 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
15 Hb_003371_230 0.2109043344 - - lactase-like b precursor [Scleropages formosus]
16 Hb_000130_060 0.2110347554 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
17 Hb_054885_020 0.2116610234 - - -
18 Hb_144096_010 0.2153467439 - - aldo-keto reductase, putative [Ricinus communis]
19 Hb_000362_110 0.2187338085 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
20 Hb_003025_050 0.2200098004 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]

Gene co-expression network

sample Hb_007785_010 Hb_007785_010 Hb_003107_020 Hb_003107_020 Hb_007785_010--Hb_003107_020 Hb_003640_030 Hb_003640_030 Hb_007785_010--Hb_003640_030 Hb_011716_110 Hb_011716_110 Hb_007785_010--Hb_011716_110 Hb_029977_050 Hb_029977_050 Hb_007785_010--Hb_029977_050 Hb_003073_170 Hb_003073_170 Hb_007785_010--Hb_003073_170 Hb_039342_010 Hb_039342_010 Hb_007785_010--Hb_039342_010 Hb_003107_020--Hb_011716_110 Hb_001055_030 Hb_001055_030 Hb_003107_020--Hb_001055_030 Hb_008864_040 Hb_008864_040 Hb_003107_020--Hb_008864_040 Hb_002739_150 Hb_002739_150 Hb_003107_020--Hb_002739_150 Hb_000120_970 Hb_000120_970 Hb_003107_020--Hb_000120_970 Hb_002903_130 Hb_002903_130 Hb_003640_030--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_003640_030--Hb_000362_110 Hb_020178_060 Hb_020178_060 Hb_003640_030--Hb_020178_060 Hb_000283_150 Hb_000283_150 Hb_003640_030--Hb_000283_150 Hb_000977_010 Hb_000977_010 Hb_003640_030--Hb_000977_010 Hb_000061_380 Hb_000061_380 Hb_003640_030--Hb_000061_380 Hb_004162_120 Hb_004162_120 Hb_011716_110--Hb_004162_120 Hb_065500_030 Hb_065500_030 Hb_011716_110--Hb_065500_030 Hb_001544_080 Hb_001544_080 Hb_011716_110--Hb_001544_080 Hb_009897_010 Hb_009897_010 Hb_011716_110--Hb_009897_010 Hb_000599_130 Hb_000599_130 Hb_011716_110--Hb_000599_130 Hb_080451_010 Hb_080451_010 Hb_011716_110--Hb_080451_010 Hb_001278_040 Hb_001278_040 Hb_029977_050--Hb_001278_040 Hb_029977_050--Hb_001544_080 Hb_029977_050--Hb_080451_010 Hb_029977_050--Hb_000120_970 Hb_003371_230 Hb_003371_230 Hb_029977_050--Hb_003371_230 Hb_000787_190 Hb_000787_190 Hb_029977_050--Hb_000787_190 Hb_151463_010 Hb_151463_010 Hb_003073_170--Hb_151463_010 Hb_003073_170--Hb_003107_020 Hb_000853_030 Hb_000853_030 Hb_003073_170--Hb_000853_030 Hb_054885_020 Hb_054885_020 Hb_003073_170--Hb_054885_020 Hb_001989_020 Hb_001989_020 Hb_003073_170--Hb_001989_020 Hb_010270_010 Hb_010270_010 Hb_039342_010--Hb_010270_010 Hb_144096_010 Hb_144096_010 Hb_039342_010--Hb_144096_010 Hb_008221_170 Hb_008221_170 Hb_039342_010--Hb_008221_170 Hb_000371_060 Hb_000371_060 Hb_039342_010--Hb_000371_060 Hb_007426_140 Hb_007426_140 Hb_039342_010--Hb_007426_140 Hb_000215_100 Hb_000215_100 Hb_039342_010--Hb_000215_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5109 57.0722 7.9705 37.8918 27.6572 30.6063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.15184 3.9456 3.53793 55.9336 0

CAGE analysis