Hb_007785_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig7785: 35494-37939
Sequence    

Annotation

kegg
ID cit:102627554
description TMV resistance protein N-like
nr
ID XP_012086191.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007785_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_045810_010 0.0501381991 - - PREDICTED: laccase-12-like [Jatropha curcas]
3 Hb_002067_110 0.0690324526 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
4 Hb_000844_020 0.0877770932 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
5 Hb_001331_050 0.0977614596 - - hypothetical protein VITISV_022439 [Vitis vinifera]
6 Hb_066262_020 0.0997926999 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
7 Hb_150643_010 0.1036238328 - - lipid binding protein, putative [Ricinus communis]
8 Hb_005396_100 0.1048429307 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000035_360 0.1058648292 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
10 Hb_000233_060 0.1071439928 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
11 Hb_003851_050 0.1139124545 - - oligopeptide transporter, putative [Ricinus communis]
12 Hb_000977_160 0.1140182451 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
13 Hb_064855_010 0.1143963278 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_006351_080 0.1145563452 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
15 Hb_005643_010 0.1160546412 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
16 Hb_001271_040 0.1193278007 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
17 Hb_047690_010 0.120254491 - - Phosphoprotein phosphatase [Theobroma cacao]
18 Hb_007259_030 0.1244176864 - - -
19 Hb_185340_020 0.1244392638 - - -
20 Hb_008248_010 0.1252835505 - - -

Gene co-expression network

sample Hb_007785_020 Hb_007785_020 Hb_045810_010 Hb_045810_010 Hb_007785_020--Hb_045810_010 Hb_002067_110 Hb_002067_110 Hb_007785_020--Hb_002067_110 Hb_000844_020 Hb_000844_020 Hb_007785_020--Hb_000844_020 Hb_001331_050 Hb_001331_050 Hb_007785_020--Hb_001331_050 Hb_066262_020 Hb_066262_020 Hb_007785_020--Hb_066262_020 Hb_150643_010 Hb_150643_010 Hb_007785_020--Hb_150643_010 Hb_045810_010--Hb_002067_110 Hb_045810_010--Hb_001331_050 Hb_006351_080 Hb_006351_080 Hb_045810_010--Hb_006351_080 Hb_045810_010--Hb_000844_020 Hb_000233_060 Hb_000233_060 Hb_045810_010--Hb_000233_060 Hb_002067_110--Hb_000844_020 Hb_002067_110--Hb_066262_020 Hb_064855_010 Hb_064855_010 Hb_002067_110--Hb_064855_010 Hb_001271_040 Hb_001271_040 Hb_002067_110--Hb_001271_040 Hb_000844_020--Hb_064855_010 Hb_000844_020--Hb_001271_040 Hb_000844_020--Hb_066262_020 Hb_000796_100 Hb_000796_100 Hb_000844_020--Hb_000796_100 Hb_101778_020 Hb_101778_020 Hb_000844_020--Hb_101778_020 Hb_005643_010 Hb_005643_010 Hb_001331_050--Hb_005643_010 Hb_119441_010 Hb_119441_010 Hb_001331_050--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_001331_050--Hb_000369_150 Hb_000879_100 Hb_000879_100 Hb_001331_050--Hb_000879_100 Hb_001331_050--Hb_006351_080 Hb_066262_020--Hb_064855_010 Hb_066262_020--Hb_001271_040 Hb_006616_050 Hb_006616_050 Hb_066262_020--Hb_006616_050 Hb_068447_010 Hb_068447_010 Hb_066262_020--Hb_068447_010 Hb_047690_010 Hb_047690_010 Hb_150643_010--Hb_047690_010 Hb_001487_020 Hb_001487_020 Hb_150643_010--Hb_001487_020 Hb_135811_020 Hb_135811_020 Hb_150643_010--Hb_135811_020 Hb_003253_060 Hb_003253_060 Hb_150643_010--Hb_003253_060 Hb_046117_050 Hb_046117_050 Hb_150643_010--Hb_046117_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.344226 0 0.0135832 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0883812 0

CAGE analysis