Hb_007786_010

Information

Type -
Description -
Location Contig7786: 7993-17951
Sequence    

Annotation

kegg
ID gmx:100801920
description uncharacterized LOC100801920
nr
ID XP_003526843.1
description PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
swissprot
ID Q9C8C1
description Protein LIKE COV 2 OS=Arabidopsis thaliana GN=LCV2 PE=2 SV=1
trembl
ID I1KBE0
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005768
description protein like cov 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57874: 7971-17762 , PASA_asmbl_57875: 15684-17757
cDNA
(Sanger)
(ID:Location)		 010_P04.ab1: 15684-17757 , 016_I24.ab1: 8355-17762

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007786_010 0.0 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
2 Hb_002818_040 0.0793526282 - - tRNA synthetase-related family protein [Populus trichocarpa]
3 Hb_012977_010 0.0835471367 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
4 Hb_000300_540 0.0843994105 - - PREDICTED: syntaxin-132 [Jatropha curcas]
5 Hb_009421_100 0.0874774357 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
6 Hb_006029_010 0.0877246932 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
7 Hb_005725_070 0.0936036019 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002377_040 0.0948302705 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_182026_010 0.0968162333 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
10 Hb_000062_230 0.0975000312 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
11 Hb_000491_080 0.0990584613 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
12 Hb_000363_340 0.0998698678 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
13 Hb_002631_050 0.1013448449 - - membrane associated ring finger 1,8, putative [Ricinus communis]
14 Hb_000462_150 0.1016916717 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
15 Hb_004993_010 0.1024602065 - - PREDICTED: uncharacterized protein LOC104889591 [Beta vulgaris subsp. vulgaris]
16 Hb_005754_020 0.1038025527 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
17 Hb_000692_260 0.1038535292 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
18 Hb_000161_030 0.1066091431 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
19 Hb_001969_040 0.1081886785 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_002874_070 0.108657515 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]

Gene co-expression network

sample Hb_007786_010 Hb_007786_010 Hb_002818_040 Hb_002818_040 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_000300_540 Hb_000300_540 Hb_007786_010--Hb_000300_540 Hb_009421_100 Hb_009421_100 Hb_007786_010--Hb_009421_100 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_012977_010--Hb_005725_070 Hb_000347_080 Hb_000347_080 Hb_012977_010--Hb_000347_080 Hb_001969_040 Hb_001969_040 Hb_012977_010--Hb_001969_040 Hb_000363_340 Hb_000363_340 Hb_012977_010--Hb_000363_340 Hb_000165_130 Hb_000165_130 Hb_012977_010--Hb_000165_130 Hb_004032_460 Hb_004032_460 Hb_000300_540--Hb_004032_460 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_002172_030 Hb_002172_030 Hb_000300_540--Hb_002172_030 Hb_000300_540--Hb_000363_340 Hb_000173_370 Hb_000173_370 Hb_000300_540--Hb_000173_370 Hb_002025_140 Hb_002025_140 Hb_009421_100--Hb_002025_140 Hb_000684_180 Hb_000684_180 Hb_009421_100--Hb_000684_180 Hb_009421_100--Hb_003384_030 Hb_000573_040 Hb_000573_040 Hb_009421_100--Hb_000573_040 Hb_009421_100--Hb_000462_150 Hb_000161_030 Hb_000161_030 Hb_006029_010--Hb_000161_030 Hb_004156_060 Hb_004156_060 Hb_006029_010--Hb_004156_060 Hb_000491_080 Hb_000491_080 Hb_006029_010--Hb_000491_080 Hb_182026_010 Hb_182026_010 Hb_006029_010--Hb_182026_010 Hb_000733_060 Hb_000733_060 Hb_006029_010--Hb_000733_060 Hb_001498_030 Hb_001498_030 Hb_005725_070--Hb_001498_030 Hb_005725_070--Hb_002025_140 Hb_005725_070--Hb_002818_040 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
319.394 48.7732 48.6553 43.2147 290.894 261.171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.857 82.8837 157.956 31.8884 24.3584

CAGE analysis