Hb_007793_030

Information

Type -
Description -
Location Contig7793: 13441-23314
Sequence    

Annotation

kegg
ID tcc:TCM_017511
description Retrotransposon protein, putative
nr
ID CAE02078.2
description OSJNBa0074B10.6 [Oryza sativa Japonica Group]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID Q7XS94
description OSJNBa0074B10.6 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0074B10.6 PE=4 SV=2
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007793_030 0.0 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
2 Hb_000968_070 0.1229754039 - - -
3 Hb_006483_120 0.1693339549 - - DNA binding protein, putative [Ricinus communis]
4 Hb_008484_020 0.1790907534 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_003291_030 0.1834395038 - - Gag-pol protein, putative [Solanum demissum]
6 Hb_182651_020 0.1849426145 - - alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_002973_120 0.1862855223 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
8 Hb_005092_070 0.1996533306 - - Oligopeptide transporter, putative [Ricinus communis]
9 Hb_000574_330 0.2006165712 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_004312_020 0.201905109 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011649_030 0.2047313488 - - hypothetical protein [Vitis hybrid cultivar]
12 Hb_025161_030 0.2047557424 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
13 Hb_001468_040 0.2051145197 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
14 Hb_041813_060 0.2072392656 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
15 Hb_009851_090 0.2080509848 - - Protein ABIL2, putative [Ricinus communis]
16 Hb_006807_010 0.208261974 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
17 Hb_001737_040 0.2098804539 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
18 Hb_041813_040 0.2105666912 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
19 Hb_151870_010 0.211018743 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
20 Hb_002983_090 0.2116790848 - - Altered inheritance of mitochondria protein 32 [Glycine soja]

Gene co-expression network

sample Hb_007793_030 Hb_007793_030 Hb_000968_070 Hb_000968_070 Hb_007793_030--Hb_000968_070 Hb_006483_120 Hb_006483_120 Hb_007793_030--Hb_006483_120 Hb_008484_020 Hb_008484_020 Hb_007793_030--Hb_008484_020 Hb_003291_030 Hb_003291_030 Hb_007793_030--Hb_003291_030 Hb_182651_020 Hb_182651_020 Hb_007793_030--Hb_182651_020 Hb_002973_120 Hb_002973_120 Hb_007793_030--Hb_002973_120 Hb_001496_050 Hb_001496_050 Hb_000968_070--Hb_001496_050 Hb_001320_020 Hb_001320_020 Hb_000968_070--Hb_001320_020 Hb_155423_010 Hb_155423_010 Hb_000968_070--Hb_155423_010 Hb_006807_010 Hb_006807_010 Hb_000968_070--Hb_006807_010 Hb_062317_020 Hb_062317_020 Hb_000968_070--Hb_062317_020 Hb_006483_120--Hb_182651_020 Hb_010620_030 Hb_010620_030 Hb_006483_120--Hb_010620_030 Hb_000439_020 Hb_000439_020 Hb_006483_120--Hb_000439_020 Hb_042463_010 Hb_042463_010 Hb_006483_120--Hb_042463_010 Hb_000574_330 Hb_000574_330 Hb_006483_120--Hb_000574_330 Hb_008484_020--Hb_003291_030 Hb_172486_010 Hb_172486_010 Hb_008484_020--Hb_172486_010 Hb_003540_070 Hb_003540_070 Hb_008484_020--Hb_003540_070 Hb_001946_130 Hb_001946_130 Hb_008484_020--Hb_001946_130 Hb_011649_030 Hb_011649_030 Hb_008484_020--Hb_011649_030 Hb_003291_030--Hb_011649_030 Hb_003291_030--Hb_001946_130 Hb_003291_030--Hb_000574_330 Hb_000352_060 Hb_000352_060 Hb_003291_030--Hb_000352_060 Hb_003687_160 Hb_003687_160 Hb_003291_030--Hb_003687_160 Hb_062013_010 Hb_062013_010 Hb_182651_020--Hb_062013_010 Hb_000366_030 Hb_000366_030 Hb_182651_020--Hb_000366_030 Hb_001080_150 Hb_001080_150 Hb_182651_020--Hb_001080_150 Hb_000329_080 Hb_000329_080 Hb_182651_020--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_182651_020--Hb_001195_370 Hb_001793_040 Hb_001793_040 Hb_002973_120--Hb_001793_040 Hb_001385_070 Hb_001385_070 Hb_002973_120--Hb_001385_070 Hb_170878_020 Hb_170878_020 Hb_002973_120--Hb_170878_020 Hb_008055_030 Hb_008055_030 Hb_002973_120--Hb_008055_030 Hb_127552_050 Hb_127552_050 Hb_002973_120--Hb_127552_050 Hb_002973_120--Hb_000968_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00415231 0.00373403 0.0109069 0 0.0046181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00713484 0.0385659

CAGE analysis