Hb_007802_010

Information

Type -
Description -
Location Contig7802: 9420-11291
Sequence    

Annotation

kegg
ID tcc:TCM_019545
description Receptor like protein 6, putative
nr
ID XP_007033368.1
description Receptor like protein 6, putative [Theobroma cacao]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID A0A061EPQ2
description Receptor like protein 6, putative OS=Theobroma cacao GN=TCM_019545 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57936: 10357-10609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007802_010 0.0 - - Receptor like protein 6, putative [Theobroma cacao]
2 Hb_000899_060 0.1382827031 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
3 Hb_037684_010 0.1454647283 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
4 Hb_000956_100 0.158506563 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_020817_030 0.161537185 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
6 Hb_000325_010 0.1644532885 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_000245_100 0.1647506923 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
8 Hb_085010_010 0.1729938652 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
9 Hb_002335_010 0.1738569396 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
10 Hb_000816_050 0.1738754652 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_011470_010 0.1742392415 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
12 Hb_027892_050 0.1764665649 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
13 Hb_002477_080 0.1818473322 - - hypothetical protein RCOM_0653450 [Ricinus communis]
14 Hb_002598_020 0.1825775666 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
15 Hb_002000_130 0.183829452 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
16 Hb_001907_050 0.1851071875 - - Receptor like protein 6, putative [Theobroma cacao]
17 Hb_002272_070 0.1883265348 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
18 Hb_002010_070 0.1891531714 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
19 Hb_001318_230 0.1892526243 - - Boron transporter, putative [Ricinus communis]
20 Hb_005306_020 0.1892871967 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]

Gene co-expression network

sample Hb_007802_010 Hb_007802_010 Hb_000899_060 Hb_000899_060 Hb_007802_010--Hb_000899_060 Hb_037684_010 Hb_037684_010 Hb_007802_010--Hb_037684_010 Hb_000956_100 Hb_000956_100 Hb_007802_010--Hb_000956_100 Hb_020817_030 Hb_020817_030 Hb_007802_010--Hb_020817_030 Hb_000325_010 Hb_000325_010 Hb_007802_010--Hb_000325_010 Hb_000245_100 Hb_000245_100 Hb_007802_010--Hb_000245_100 Hb_000899_060--Hb_037684_010 Hb_002477_080 Hb_002477_080 Hb_000899_060--Hb_002477_080 Hb_002374_520 Hb_002374_520 Hb_000899_060--Hb_002374_520 Hb_002598_020 Hb_002598_020 Hb_000899_060--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_000899_060--Hb_000090_020 Hb_103541_010 Hb_103541_010 Hb_000899_060--Hb_103541_010 Hb_037684_010--Hb_002374_520 Hb_037684_010--Hb_020817_030 Hb_037684_010--Hb_000245_100 Hb_002053_170 Hb_002053_170 Hb_037684_010--Hb_002053_170 Hb_037684_010--Hb_002598_020 Hb_027892_050 Hb_027892_050 Hb_000956_100--Hb_027892_050 Hb_002335_010 Hb_002335_010 Hb_000956_100--Hb_002335_010 Hb_000041_160 Hb_000041_160 Hb_000956_100--Hb_000041_160 Hb_007103_020 Hb_007103_020 Hb_000956_100--Hb_007103_020 Hb_030949_010 Hb_030949_010 Hb_000956_100--Hb_030949_010 Hb_000834_100 Hb_000834_100 Hb_000956_100--Hb_000834_100 Hb_020817_030--Hb_000899_060 Hb_020817_030--Hb_002053_170 Hb_001907_050 Hb_001907_050 Hb_020817_030--Hb_001907_050 Hb_011470_010 Hb_011470_010 Hb_020817_030--Hb_011470_010 Hb_000325_010--Hb_002477_080 Hb_000816_050 Hb_000816_050 Hb_000325_010--Hb_000816_050 Hb_014361_040 Hb_014361_040 Hb_000325_010--Hb_014361_040 Hb_008092_020 Hb_008092_020 Hb_000325_010--Hb_008092_020 Hb_135720_010 Hb_135720_010 Hb_000325_010--Hb_135720_010 Hb_001728_130 Hb_001728_130 Hb_000325_010--Hb_001728_130 Hb_005329_030 Hb_005329_030 Hb_000245_100--Hb_005329_030 Hb_003858_060 Hb_003858_060 Hb_000245_100--Hb_003858_060 Hb_006355_070 Hb_006355_070 Hb_000245_100--Hb_006355_070 Hb_004204_220 Hb_004204_220 Hb_000245_100--Hb_004204_220 Hb_009222_080 Hb_009222_080 Hb_000245_100--Hb_009222_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.227312 2.35175 0.181451 2.58764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.990246 1.8442

CAGE analysis