Hb_007803_050

Information

Type -
Description -
Location Contig7803: 52504-69357
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12460g
description POPTRDRAFT_661002, POPTRDRAFT_726951; hypothetical protein
nr
ID XP_011029428.1
description PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
swissprot
ID F4K0C4
description Trafficking protein particle complex II-specific subunit 130 homolog OS=Arabidopsis thaliana GN=TRS130 PE=1 SV=1
trembl
ID A0A067KRT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00683 PE=4 SV=1
Gene Ontology
ID GO:0000919
description club isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57946: 52551-57738 , PASA_asmbl_57948: 57874-69349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007803_050 0.0 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
2 Hb_002909_140 0.055266508 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
3 Hb_006660_010 0.0619224214 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
4 Hb_000127_040 0.0670314043 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
5 Hb_012022_090 0.0675240513 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
6 Hb_000592_030 0.0714898381 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
7 Hb_002811_060 0.0779839402 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
8 Hb_010174_040 0.0781032372 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
9 Hb_002213_070 0.0810194356 - - epsilon-adaptin family protein [Populus trichocarpa]
10 Hb_001655_030 0.082133367 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
11 Hb_000116_500 0.0824308463 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
12 Hb_001199_100 0.0827993868 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
13 Hb_004935_030 0.0833626432 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
14 Hb_000213_010 0.0843759927 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
15 Hb_001617_060 0.0846870613 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
16 Hb_000212_380 0.0853771143 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
17 Hb_020378_030 0.0856591567 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
18 Hb_000613_050 0.0860985113 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
19 Hb_000083_120 0.0862541668 - - transcription factor, putative [Ricinus communis]
20 Hb_000390_320 0.0865998691 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]

Gene co-expression network

sample Hb_007803_050 Hb_007803_050 Hb_002909_140 Hb_002909_140 Hb_007803_050--Hb_002909_140 Hb_006660_010 Hb_006660_010 Hb_007803_050--Hb_006660_010 Hb_000127_040 Hb_000127_040 Hb_007803_050--Hb_000127_040 Hb_012022_090 Hb_012022_090 Hb_007803_050--Hb_012022_090 Hb_000592_030 Hb_000592_030 Hb_007803_050--Hb_000592_030 Hb_002811_060 Hb_002811_060 Hb_007803_050--Hb_002811_060 Hb_000212_380 Hb_000212_380 Hb_002909_140--Hb_000212_380 Hb_012498_010 Hb_012498_010 Hb_002909_140--Hb_012498_010 Hb_001221_080 Hb_001221_080 Hb_002909_140--Hb_001221_080 Hb_010174_040 Hb_010174_040 Hb_002909_140--Hb_010174_040 Hb_002169_050 Hb_002169_050 Hb_002909_140--Hb_002169_050 Hb_011310_160 Hb_011310_160 Hb_006660_010--Hb_011310_160 Hb_006660_010--Hb_002811_060 Hb_000212_310 Hb_000212_310 Hb_006660_010--Hb_000212_310 Hb_007062_020 Hb_007062_020 Hb_006660_010--Hb_007062_020 Hb_006660_010--Hb_000592_030 Hb_002213_070 Hb_002213_070 Hb_000127_040--Hb_002213_070 Hb_004935_030 Hb_004935_030 Hb_000127_040--Hb_004935_030 Hb_000457_260 Hb_000457_260 Hb_000127_040--Hb_000457_260 Hb_032050_040 Hb_032050_040 Hb_000127_040--Hb_032050_040 Hb_054865_150 Hb_054865_150 Hb_000127_040--Hb_054865_150 Hb_012022_090--Hb_002811_060 Hb_000213_010 Hb_000213_010 Hb_012022_090--Hb_000213_010 Hb_000116_500 Hb_000116_500 Hb_012022_090--Hb_000116_500 Hb_009548_020 Hb_009548_020 Hb_012022_090--Hb_009548_020 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_002942_100 Hb_002942_100 Hb_012022_090--Hb_002942_100 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_005054_100 Hb_005054_100 Hb_002811_060--Hb_005054_100 Hb_002811_060--Hb_000116_500 Hb_003988_010 Hb_003988_010 Hb_002811_060--Hb_003988_010 Hb_000608_320 Hb_000608_320 Hb_002811_060--Hb_000608_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1571 14.0689 12.68 18.7867 17.8972 28.1353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4966 9.21401 20.3823 19.1761 14.6113

CAGE analysis