Hb_007805_020

Information

Type -
Description -
Location Contig7805: 20709-26921
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007805_020 0.0 - - -
2 Hb_068347_010 0.2008362416 - - -
3 Hb_010979_010 0.2240901379 - - -
4 Hb_007926_010 0.23155465 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
5 Hb_004330_030 0.2505872745 - - -
6 Hb_171108_010 0.2533717273 - - -
7 Hb_010770_010 0.2688234409 - - -
8 Hb_001214_170 0.2739304308 - - pyruvate kinase family protein [Medicago truncatula]
9 Hb_113823_010 0.2812431443 - - -
10 Hb_001944_030 0.2852161213 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
11 Hb_034569_020 0.2899499188 - - -
12 Hb_087221_010 0.2942937404 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
13 Hb_012404_030 0.2945343488 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
14 Hb_012384_050 0.295586872 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
15 Hb_073212_010 0.2966013628 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
16 Hb_002843_090 0.2980426634 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
17 Hb_000028_630 0.3020113006 - - PIN-like protein, partial [Selaginella apoda]
18 Hb_004007_150 0.3023995352 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
19 Hb_004899_280 0.3036132751 - - -
20 Hb_009742_010 0.3071644587 - - -

Gene co-expression network

sample Hb_007805_020 Hb_007805_020 Hb_068347_010 Hb_068347_010 Hb_007805_020--Hb_068347_010 Hb_010979_010 Hb_010979_010 Hb_007805_020--Hb_010979_010 Hb_007926_010 Hb_007926_010 Hb_007805_020--Hb_007926_010 Hb_004330_030 Hb_004330_030 Hb_007805_020--Hb_004330_030 Hb_171108_010 Hb_171108_010 Hb_007805_020--Hb_171108_010 Hb_010770_010 Hb_010770_010 Hb_007805_020--Hb_010770_010 Hb_002843_090 Hb_002843_090 Hb_068347_010--Hb_002843_090 Hb_000347_090 Hb_000347_090 Hb_068347_010--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_068347_010--Hb_011903_010 Hb_020549_010 Hb_020549_010 Hb_068347_010--Hb_020549_010 Hb_000982_150 Hb_000982_150 Hb_068347_010--Hb_000982_150 Hb_113823_010 Hb_113823_010 Hb_010979_010--Hb_113823_010 Hb_034569_020 Hb_034569_020 Hb_010979_010--Hb_034569_020 Hb_184798_040 Hb_184798_040 Hb_010979_010--Hb_184798_040 Hb_009742_010 Hb_009742_010 Hb_010979_010--Hb_009742_010 Hb_004899_280 Hb_004899_280 Hb_010979_010--Hb_004899_280 Hb_001214_170 Hb_001214_170 Hb_007926_010--Hb_001214_170 Hb_009189_040 Hb_009189_040 Hb_007926_010--Hb_009189_040 Hb_001916_060 Hb_001916_060 Hb_007926_010--Hb_001916_060 Hb_003222_010 Hb_003222_010 Hb_007926_010--Hb_003222_010 Hb_054436_010 Hb_054436_010 Hb_007926_010--Hb_054436_010 Hb_001944_030 Hb_001944_030 Hb_004330_030--Hb_001944_030 Hb_000146_060 Hb_000146_060 Hb_004330_030--Hb_000146_060 Hb_004330_030--Hb_001214_170 Hb_005608_010 Hb_005608_010 Hb_004330_030--Hb_005608_010 Hb_118346_010 Hb_118346_010 Hb_004330_030--Hb_118346_010 Hb_000905_070 Hb_000905_070 Hb_171108_010--Hb_000905_070 Hb_002493_030 Hb_002493_030 Hb_171108_010--Hb_002493_030 Hb_004007_150 Hb_004007_150 Hb_171108_010--Hb_004007_150 Hb_043655_010 Hb_043655_010 Hb_171108_010--Hb_043655_010 Hb_003534_040 Hb_003534_040 Hb_171108_010--Hb_003534_040 Hb_000922_310 Hb_000922_310 Hb_171108_010--Hb_000922_310 Hb_176844_010 Hb_176844_010 Hb_010770_010--Hb_176844_010 Hb_012384_050 Hb_012384_050 Hb_010770_010--Hb_012384_050 Hb_087221_010 Hb_087221_010 Hb_010770_010--Hb_087221_010 Hb_073212_010 Hb_073212_010 Hb_010770_010--Hb_073212_010 Hb_007382_040 Hb_007382_040 Hb_010770_010--Hb_007382_040 Hb_000046_410 Hb_000046_410 Hb_010770_010--Hb_000046_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.4067 14.7838 9.06112 4.32367 26.4724 4.04345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.684093 0.813893 1.28737 0

CAGE analysis