Hb_007809_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig7809: 20794-22302
Sequence    

Annotation

kegg
ID rcu:RCOM_0993030
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID XP_012086017.1
description PREDICTED: transcription factor bHLH3 [Jatropha curcas]
swissprot
ID O23487
description Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1
trembl
ID B9S4V3
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0993030 PE=4 SV=1
Gene Ontology
ID GO:0032440
description transcription factor bhlh3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57956: 22551-22958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007809_060 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
2 Hb_005016_030 0.1010313286 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
3 Hb_001178_060 0.1040243667 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
4 Hb_001034_020 0.1088053005 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
5 Hb_000076_290 0.1157313796 - - translation factor sui1, putative [Ricinus communis]
6 Hb_000174_200 0.1164871775 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
7 Hb_001259_030 0.1195324854 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
8 Hb_060437_010 0.1199972643 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
9 Hb_000640_210 0.1261233611 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
10 Hb_160818_010 0.1275067845 - - -
11 Hb_005028_010 0.1285271947 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
12 Hb_000322_170 0.1285991585 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
13 Hb_001439_180 0.1288145528 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
14 Hb_003050_090 0.1298845934 - - lupus la ribonucleoprotein, putative [Ricinus communis]
15 Hb_004032_350 0.130760934 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
16 Hb_011930_010 0.1313278187 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
17 Hb_012760_200 0.1314922733 - - protein phsophatase-2a, putative [Ricinus communis]
18 Hb_001523_010 0.1317916037 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
19 Hb_000172_530 0.1325704682 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
20 Hb_000088_180 0.1353981312 - - hypothetical protein JCGZ_11198 [Jatropha curcas]

Gene co-expression network

sample Hb_007809_060 Hb_007809_060 Hb_005016_030 Hb_005016_030 Hb_007809_060--Hb_005016_030 Hb_001178_060 Hb_001178_060 Hb_007809_060--Hb_001178_060 Hb_001034_020 Hb_001034_020 Hb_007809_060--Hb_001034_020 Hb_000076_290 Hb_000076_290 Hb_007809_060--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_007809_060--Hb_000174_200 Hb_001259_030 Hb_001259_030 Hb_007809_060--Hb_001259_030 Hb_005016_030--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_005016_030--Hb_000322_170 Hb_002149_040 Hb_002149_040 Hb_005016_030--Hb_002149_040 Hb_006173_020 Hb_006173_020 Hb_005016_030--Hb_006173_020 Hb_000320_440 Hb_000320_440 Hb_005016_030--Hb_000320_440 Hb_001016_060 Hb_001016_060 Hb_005016_030--Hb_001016_060 Hb_001178_060--Hb_000322_170 Hb_000640_210 Hb_000640_210 Hb_001178_060--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001178_060--Hb_060437_010 Hb_001178_060--Hb_000076_290 Hb_001178_060--Hb_002149_040 Hb_001034_020--Hb_060437_010 Hb_000331_480 Hb_000331_480 Hb_001034_020--Hb_000331_480 Hb_001439_180 Hb_001439_180 Hb_001034_020--Hb_001439_180 Hb_012760_200 Hb_012760_200 Hb_001034_020--Hb_012760_200 Hb_004032_350 Hb_004032_350 Hb_001034_020--Hb_004032_350 Hb_002675_190 Hb_002675_190 Hb_001034_020--Hb_002675_190 Hb_000076_290--Hb_000174_200 Hb_000076_290--Hb_004032_350 Hb_000076_290--Hb_000640_210 Hb_000076_290--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_000174_200--Hb_000640_210 Hb_000174_200--Hb_004032_350 Hb_000174_200--Hb_015401_020 Hb_000174_200--Hb_000322_170 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040 Hb_001259_030--Hb_000640_210 Hb_001259_030--Hb_060437_010 Hb_005028_010 Hb_005028_010 Hb_001259_030--Hb_005028_010 Hb_000613_020 Hb_000613_020 Hb_001259_030--Hb_000613_020 Hb_001140_080 Hb_001140_080 Hb_001259_030--Hb_001140_080 Hb_003050_090 Hb_003050_090 Hb_001259_030--Hb_003050_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.503 3.56883 0.207153 0.190225 6.1878 9.04862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7961 1.83741 3.10625 0.589177 0.486319

CAGE analysis