Hb_007810_010

Information

Type -
Description -
Location Contig7810: 5370-8814
Sequence    

Annotation

kegg
ID rcu:RCOM_1207490
description hypothetical protein
nr
ID XP_012089216.1
description PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L920
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01456 PE=4 SV=1
Gene Ontology
ID GO:0005622
description PREDICTED: uncharacterized protein LOC105647655 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57959: 7571-8907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_010 0.0 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
2 Hb_002043_030 0.0899221413 - - hypothetical protein RCOM_1486170 [Ricinus communis]
3 Hb_004218_020 0.0925911575 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000008_440 0.0932560651 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
5 Hb_003657_010 0.0942338544 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000120_640 0.1002669124 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001541_070 0.108871241 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
8 Hb_001287_040 0.1109861794 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
9 Hb_006740_030 0.1131937424 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
10 Hb_000304_080 0.113312488 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
11 Hb_009904_010 0.1147652132 - - hypothetical protein JCGZ_16885 [Jatropha curcas]
12 Hb_000256_040 0.1176526145 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
13 Hb_032202_040 0.1181900306 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]
14 Hb_002542_110 0.118437469 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
15 Hb_006162_030 0.1189925522 - - PREDICTED: alpha-L-fucosidase 2-like isoform X1 [Populus euphratica]
16 Hb_000309_130 0.1196842062 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
17 Hb_010872_070 0.1204268564 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007533_040 0.1222252057 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_010068_080 0.1231272426 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
20 Hb_032717_060 0.1238945188 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007810_010 Hb_007810_010 Hb_002043_030 Hb_002043_030 Hb_007810_010--Hb_002043_030 Hb_004218_020 Hb_004218_020 Hb_007810_010--Hb_004218_020 Hb_000008_440 Hb_000008_440 Hb_007810_010--Hb_000008_440 Hb_003657_010 Hb_003657_010 Hb_007810_010--Hb_003657_010 Hb_000120_640 Hb_000120_640 Hb_007810_010--Hb_000120_640 Hb_001541_070 Hb_001541_070 Hb_007810_010--Hb_001541_070 Hb_002311_360 Hb_002311_360 Hb_002043_030--Hb_002311_360 Hb_092462_020 Hb_092462_020 Hb_002043_030--Hb_092462_020 Hb_000309_130 Hb_000309_130 Hb_002043_030--Hb_000309_130 Hb_003038_240 Hb_003038_240 Hb_002043_030--Hb_003038_240 Hb_002704_070 Hb_002704_070 Hb_002043_030--Hb_002704_070 Hb_006740_030 Hb_006740_030 Hb_004218_020--Hb_006740_030 Hb_003913_130 Hb_003913_130 Hb_004218_020--Hb_003913_130 Hb_004218_020--Hb_000120_640 Hb_032717_060 Hb_032717_060 Hb_004218_020--Hb_032717_060 Hb_004218_010 Hb_004218_010 Hb_004218_020--Hb_004218_010 Hb_032202_040 Hb_032202_040 Hb_000008_440--Hb_032202_040 Hb_001404_110 Hb_001404_110 Hb_000008_440--Hb_001404_110 Hb_000008_440--Hb_003657_010 Hb_002542_110 Hb_002542_110 Hb_000008_440--Hb_002542_110 Hb_000497_300 Hb_000497_300 Hb_000008_440--Hb_000497_300 Hb_010068_080 Hb_010068_080 Hb_000008_440--Hb_010068_080 Hb_004117_260 Hb_004117_260 Hb_003657_010--Hb_004117_260 Hb_022256_020 Hb_022256_020 Hb_003657_010--Hb_022256_020 Hb_004208_030 Hb_004208_030 Hb_003657_010--Hb_004208_030 Hb_000197_250 Hb_000197_250 Hb_003657_010--Hb_000197_250 Hb_003657_010--Hb_010068_080 Hb_001357_200 Hb_001357_200 Hb_000120_640--Hb_001357_200 Hb_001014_060 Hb_001014_060 Hb_000120_640--Hb_001014_060 Hb_000120_640--Hb_003913_130 Hb_000025_350 Hb_000025_350 Hb_000120_640--Hb_000025_350 Hb_007533_040 Hb_007533_040 Hb_000120_640--Hb_007533_040 Hb_000270_120 Hb_000270_120 Hb_001541_070--Hb_000270_120 Hb_001541_070--Hb_002542_110 Hb_001541_070--Hb_000008_440 Hb_001405_070 Hb_001405_070 Hb_001541_070--Hb_001405_070 Hb_000086_630 Hb_000086_630 Hb_001541_070--Hb_000086_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.04476 19.9337 23.857 13.0773 7.19102 8.05422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7021 13.5761 27.9385 8.6343 21.4013

CAGE analysis