Hb_007810_030

Information

Type -
Description -
Location Contig7810: 34522-35196
Sequence    

Annotation

kegg
ID rcu:RCOM_1207230
description hypothetical protein
nr
ID XP_012089268.1
description PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01459 PE=4 SV=1
Gene Ontology
ID GO:0006949
description PREDICTED: uncharacterized protein LOC105647693

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_030 0.0 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
2 Hb_015934_020 0.0720719594 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
3 Hb_000078_010 0.0725727138 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
4 Hb_000367_280 0.0779016447 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
5 Hb_011245_020 0.0982589651 - - Ferrochelatase [Medicago truncatula]
6 Hb_001213_120 0.107932845 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
7 Hb_000032_220 0.1090154215 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
8 Hb_001268_080 0.110944419 - - catalytic, putative [Ricinus communis]
9 Hb_001935_030 0.1113876663 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006831_030 0.1179492098 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
11 Hb_002387_060 0.1194334044 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004297_040 0.1257507526 - - acyl CoA reductase [Hevea brasiliensis]
13 Hb_002660_160 0.1257825796 - - protein binding protein, putative [Ricinus communis]
14 Hb_000329_600 0.1268155903 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
15 Hb_000684_160 0.1270442324 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
16 Hb_000085_250 0.1280112344 - - sodium/hydrogen exchanger, putative [Ricinus communis]
17 Hb_002685_090 0.1286450668 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
18 Hb_010589_040 0.1300056786 - - conserved hypothetical protein [Ricinus communis]
19 Hb_116264_010 0.1300627737 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
20 Hb_111648_010 0.1309378194 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]

Gene co-expression network

sample Hb_007810_030 Hb_007810_030 Hb_015934_020 Hb_015934_020 Hb_007810_030--Hb_015934_020 Hb_000078_010 Hb_000078_010 Hb_007810_030--Hb_000078_010 Hb_000367_280 Hb_000367_280 Hb_007810_030--Hb_000367_280 Hb_011245_020 Hb_011245_020 Hb_007810_030--Hb_011245_020 Hb_001213_120 Hb_001213_120 Hb_007810_030--Hb_001213_120 Hb_000032_220 Hb_000032_220 Hb_007810_030--Hb_000032_220 Hb_005000_290 Hb_005000_290 Hb_015934_020--Hb_005000_290 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_015934_020--Hb_000032_220 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_000078_010--Hb_000367_280 Hb_000078_010--Hb_001213_120 Hb_111648_010 Hb_111648_010 Hb_000078_010--Hb_111648_010 Hb_004297_040 Hb_004297_040 Hb_000078_010--Hb_004297_040 Hb_001268_080 Hb_001268_080 Hb_000367_280--Hb_001268_080 Hb_000367_280--Hb_001213_120 Hb_000367_280--Hb_011245_020 Hb_000367_280--Hb_004297_040 Hb_078633_010 Hb_078633_010 Hb_000367_280--Hb_078633_010 Hb_003043_120 Hb_003043_120 Hb_011245_020--Hb_003043_120 Hb_006831_030 Hb_006831_030 Hb_011245_020--Hb_006831_030 Hb_011245_020--Hb_001268_080 Hb_017862_010 Hb_017862_010 Hb_011245_020--Hb_017862_010 Hb_001213_120--Hb_001268_080 Hb_001213_120--Hb_078633_010 Hb_001213_120--Hb_004297_040 Hb_001213_120--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000032_220--Hb_001396_220 Hb_000032_220--Hb_002387_060 Hb_002078_460 Hb_002078_460 Hb_000032_220--Hb_002078_460 Hb_183963_020 Hb_183963_020 Hb_000032_220--Hb_183963_020 Hb_002352_010 Hb_002352_010 Hb_000032_220--Hb_002352_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9651 0.833986 2.24257 6.31268 19.7021 45.2053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.0067 92.0219 92.9869 7.71883 2.89851

CAGE analysis