Hb_007810_070

Information

Type -
Description -
Location Contig7810: 51245-54116
Sequence    

Annotation

kegg
ID vvi:104882159
description uncharacterized LOC104882159
nr
ID CAN75041.1
description hypothetical protein VITISV_027174 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BVC1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1
Gene Ontology
ID GO:0000166
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_070 0.0 - - hypothetical protein VITISV_027174 [Vitis vinifera]
2 Hb_003032_090 0.1859346743 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
3 Hb_001338_150 0.1982607956 - - hypothetical chloroplast RF1 [Dillenia indica]
4 Hb_062192_020 0.2129372026 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
5 Hb_004713_020 0.2256472489 - - -
6 Hb_062192_010 0.2281884517 - - -
7 Hb_162094_010 0.2308945513 - - RNA polymerase alpha subunit [Hevea brasiliensis]
8 Hb_003963_040 0.2319086978 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
9 Hb_062273_010 0.2363542201 - - ATP synthase F0 subunit 9 [Chara vulgaris]
10 Hb_012049_030 0.2364567041 - - RNA polymerase beta subunit [Hevea brasiliensis]
11 Hb_004459_070 0.2364942362 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
12 Hb_007313_060 0.2371839792 - - PREDICTED: paramyosin [Jatropha curcas]
13 Hb_003693_030 0.239783774 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
14 Hb_002551_030 0.2421072321 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
15 Hb_034168_010 0.2424658841 - - hypothetical protein [Azospirillum sp. CAG:260]
16 Hb_004880_090 0.243749321 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_005656_150 0.2472009552 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
18 Hb_003693_020 0.2479498452 - - Ycf1, partial (chloroplast) [Clusia rosea]
19 Hb_006474_010 0.248815048 - - hypothetical protein VITISV_032357 [Vitis vinifera]
20 Hb_017225_010 0.2490752125 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_007810_070 Hb_007810_070 Hb_003032_090 Hb_003032_090 Hb_007810_070--Hb_003032_090 Hb_001338_150 Hb_001338_150 Hb_007810_070--Hb_001338_150 Hb_062192_020 Hb_062192_020 Hb_007810_070--Hb_062192_020 Hb_004713_020 Hb_004713_020 Hb_007810_070--Hb_004713_020 Hb_062192_010 Hb_062192_010 Hb_007810_070--Hb_062192_010 Hb_162094_010 Hb_162094_010 Hb_007810_070--Hb_162094_010 Hb_003032_090--Hb_001338_150 Hb_003963_040 Hb_003963_040 Hb_003032_090--Hb_003963_040 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_000156_240 Hb_000156_240 Hb_003032_090--Hb_000156_240 Hb_001338_160 Hb_001338_160 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090 Hb_001338_150--Hb_003963_040 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_001338_150--Hb_001338_160 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_001338_150--Hb_000156_240 Hb_002551_030 Hb_002551_030 Hb_062192_020--Hb_002551_030 Hb_034168_010 Hb_034168_010 Hb_062192_020--Hb_034168_010 Hb_027638_010 Hb_027638_010 Hb_062192_020--Hb_027638_010 Hb_001508_010 Hb_001508_010 Hb_062192_020--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_062192_020--Hb_171685_070 Hb_001490_020 Hb_001490_020 Hb_062192_020--Hb_001490_020 Hb_004068_010 Hb_004068_010 Hb_004713_020--Hb_004068_010 Hb_000439_020 Hb_000439_020 Hb_004713_020--Hb_000439_020 Hb_005779_090 Hb_005779_090 Hb_004713_020--Hb_005779_090 Hb_007413_030 Hb_007413_030 Hb_004713_020--Hb_007413_030 Hb_015234_010 Hb_015234_010 Hb_004713_020--Hb_015234_010 Hb_012049_030 Hb_012049_030 Hb_004713_020--Hb_012049_030 Hb_104735_020 Hb_104735_020 Hb_062192_010--Hb_104735_020 Hb_006040_150 Hb_006040_150 Hb_062192_010--Hb_006040_150 Hb_000826_080 Hb_000826_080 Hb_062192_010--Hb_000826_080 Hb_003633_120 Hb_003633_120 Hb_062192_010--Hb_003633_120 Hb_062192_010--Hb_062192_020 Hb_062192_010--Hb_162094_010 Hb_162094_010--Hb_003963_040 Hb_162094_010--Hb_001338_150 Hb_162094_010--Hb_001338_160 Hb_162094_010--Hb_003032_090 Hb_001155_020 Hb_001155_020 Hb_162094_010--Hb_001155_020 Hb_003693_060 Hb_003693_060 Hb_162094_010--Hb_003693_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126325 0.025643 0.0477694 0.0399435 0.0401195 0.0200034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0185172 0 0.022109 0.820873

CAGE analysis