Hb_007810_090

Information

Type -
Description -
Location Contig7810: 57157-64330
Sequence    

Annotation

kegg
ID cput:CONPUDRAFT_72311
description actin actin-like protein
nr
ID XP_007767488.1
description actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
swissprot
ID P30171
description Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1
trembl
ID H2ZUX4
description Uncharacterized protein OS=Latimeria chalumnae GN=LOC102352149 PE=3 SV=1
Gene Ontology
ID GO:0005737
description actin actin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57967: 62501-63590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007810_090 0.0 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
2 Hb_001377_430 0.2083732041 - - PREDICTED: laccase-6 [Jatropha curcas]
3 Hb_000100_060 0.2194103899 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
4 Hb_005539_370 0.224990574 - - ring finger protein, putative [Ricinus communis]
5 Hb_000742_160 0.2258424758 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
6 Hb_007632_100 0.2258579547 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
7 Hb_066778_010 0.2290372764 - - -
8 Hb_105959_010 0.2342329745 - - asparagine synthetase, putative [Ricinus communis]
9 Hb_001902_200 0.2346988186 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
10 Hb_004147_070 0.2360579148 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
11 Hb_000816_190 0.2432265371 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004204_110 0.2434618001 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
13 Hb_001008_200 0.2461712358 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
14 Hb_001366_170 0.251602034 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
15 Hb_001621_120 0.2559673012 - - Zeamatin precursor, putative [Ricinus communis]
16 Hb_000010_310 0.25687491 - - PREDICTED: probable pectate lyase 18 [Populus euphratica]
17 Hb_054865_160 0.2580877051 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
18 Hb_002490_030 0.259777888 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000540_160 0.2602798981 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
20 Hb_002900_100 0.2619365977 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]

Gene co-expression network

sample Hb_007810_090 Hb_007810_090 Hb_001377_430 Hb_001377_430 Hb_007810_090--Hb_001377_430 Hb_000100_060 Hb_000100_060 Hb_007810_090--Hb_000100_060 Hb_005539_370 Hb_005539_370 Hb_007810_090--Hb_005539_370 Hb_000742_160 Hb_000742_160 Hb_007810_090--Hb_000742_160 Hb_007632_100 Hb_007632_100 Hb_007810_090--Hb_007632_100 Hb_066778_010 Hb_066778_010 Hb_007810_090--Hb_066778_010 Hb_001377_430--Hb_005539_370 Hb_001621_120 Hb_001621_120 Hb_001377_430--Hb_001621_120 Hb_009748_010 Hb_009748_010 Hb_001377_430--Hb_009748_010 Hb_105959_010 Hb_105959_010 Hb_001377_430--Hb_105959_010 Hb_001377_430--Hb_000100_060 Hb_000100_060--Hb_001621_120 Hb_000816_190 Hb_000816_190 Hb_000100_060--Hb_000816_190 Hb_002164_010 Hb_002164_010 Hb_000100_060--Hb_002164_010 Hb_000311_040 Hb_000311_040 Hb_000100_060--Hb_000311_040 Hb_145655_010 Hb_145655_010 Hb_005539_370--Hb_145655_010 Hb_005539_370--Hb_066778_010 Hb_005539_370--Hb_007632_100 Hb_004774_030 Hb_004774_030 Hb_005539_370--Hb_004774_030 Hb_000244_170 Hb_000244_170 Hb_000742_160--Hb_000244_170 Hb_001008_200 Hb_001008_200 Hb_000742_160--Hb_001008_200 Hb_000765_060 Hb_000765_060 Hb_000742_160--Hb_000765_060 Hb_004088_040 Hb_004088_040 Hb_000742_160--Hb_004088_040 Hb_000197_020 Hb_000197_020 Hb_000742_160--Hb_000197_020 Hb_012760_050 Hb_012760_050 Hb_000742_160--Hb_012760_050 Hb_053709_040 Hb_053709_040 Hb_007632_100--Hb_053709_040 Hb_024074_020 Hb_024074_020 Hb_007632_100--Hb_024074_020 Hb_003207_150 Hb_003207_150 Hb_007632_100--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_007632_100--Hb_001366_170 Hb_003058_230 Hb_003058_230 Hb_007632_100--Hb_003058_230 Hb_002660_110 Hb_002660_110 Hb_007632_100--Hb_002660_110 Hb_066778_010--Hb_053709_040 Hb_066778_010--Hb_001366_170 Hb_001902_200 Hb_001902_200 Hb_066778_010--Hb_001902_200 Hb_007483_060 Hb_007483_060 Hb_066778_010--Hb_007483_060 Hb_066778_010--Hb_007632_100 Hb_031284_030 Hb_031284_030 Hb_066778_010--Hb_031284_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.528731 0.209602 2.09302 6.4778 0.674297 0.265214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.243431 0.368365 2.02014 0.520962 0.0938429

CAGE analysis